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Sample GSM692447 Query DataSets for GSM692447
Status Public on Dec 30, 2011
Title Sg Dox+ rep2
Sample type RNA
 
Source name Sg Dox+ rep2
Organism Mus musculus
Characteristics genetic background: C57BL/6J
genotype: staggerer
treatment: doxorubicin
cell type: embryonic fibroblast
Treatment protocol Cells were treated doxorubicin for 12 hours.
Growth protocol Media: DMEM, 2mM L-Glutamine and 10% Fetal Bovine Serum
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Cy3
Label protocol Standard Illumina protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Illumina BeadScan 500 System
Description Staggerer MEF cells after doxorubicin treament for 12 hours
Data processing The data were normalised using quantile normalization method with beadarray version 1.10 and lumi version 1.8.3 in R/Bioconductor package.
 
Submission date Mar 16, 2011
Last update date Dec 30, 2011
Contact name Bhin Jin-hyuk
E-mail(s) bynjh007@postech.ac.kr
Organization name POSTECH
Department Department of Chemical engineering
Lab Systems biology and Medicine
Street address Ji-gok research center, hyoja-dong, Nam-gu
City Pohang
ZIP/Postal code 790-784
Country South Korea
 
Platform ID GPL6885
Series (1)
GSE27983 Genome-wide analysis of gene expression perturbed by RORa in MEFs subjected to control and 12 hour DNA damaged condition.

Data table header descriptions
ID_REF
VALUE quantile normalized

Data table
ID_REF VALUE
ILMN_1212607 8.008455049
ILMN_1212612 10.8092524
ILMN_1212619 9.137277465
ILMN_1212628 7.457800268
ILMN_1212632 7.693116934
ILMN_1212636 12.79882242
ILMN_1212637 11.77488907
ILMN_1212645 7.012912856
ILMN_1212648 8.836654776
ILMN_1212653 8.890481228
ILMN_1212672 8.588073298
ILMN_1212682 7.424499635
ILMN_1212683 7.24420989
ILMN_1212685 7.433828408
ILMN_1212692 11.5905884
ILMN_1212693 7.798560789
ILMN_1212695 7.294778694
ILMN_1212698 7.467374629
ILMN_1212702 7.666171204
ILMN_1212703 8.643979278

Total number of rows: 25697

Table truncated, full table size 624 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table
Processed data are available on Series record

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