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Sample GSM69838 Query DataSets for GSM69838
Status Public on Aug 15, 2006
Title MO_CTb_SON_NCBI
Sample type RNA
 
Source name Supraoptic nucleus_control
Organism Rattus norvegicus
Characteristics Strain: Sprague Dawley
Gender: Male
Age: 10-12 weeks
Tissue: Supraoptic nucleus
Extracted molecule total RNA
Label Enzo BioArray High Yield RNA Transcript Labelling Kit (Affymetrix, Santa Clara, CA, USA and Enzo Diagnostics).
Label protocol In vitro transcription of template was carried out in the presence of biotinylated UTP and CTP using the Enzo BioArray High Yield RNA Transcript Labelling Kit (Affymetrix, Santa Clara, CA, USA and Enzo Diagnostics).
 
Hybridization protocol Standard Affymetrix procedures
Scan protocol Standard Affymetrix procedures
Description SON - Control
Data processing Microarray Suite version 5.0
 
Submission date Aug 15, 2005
Last update date Aug 15, 2005
Contact name DAVID MURPHY
Organization name University of Bristol
Department Medicine and Dentistry
Lab Laboratories for Integrative Neuroscience and Endocrinolgy
Street address Whitson Street
City Bristol
State/province AVON
ZIP/Postal code BS1 3NY
Country United Kingdom
 
Platform ID GPL85
Series (1)
GSE3131 Microarray analysis of the dynamics of gene expression plasticity in the supraoptic nucleus following dehydration

Data table header descriptions
ID_REF
VALUE Signal intensity
ABS_CALL Indication of the transcript being present (P), absent (A), marginal (M)
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 9.8 A 0.60308
AFFX-MurIL10_at 31.2 A 0.382599
AFFX-MurIL4_at 9.9 A 0.772364
AFFX-MurFAS_at 26.3 A 0.327079
AFFX-BioB-5_at 113.5 P 0.015183
AFFX-BioB-M_at 246.1 P 0.000662
AFFX-BioB-3_at 147.6 P 0.000972
AFFX-BioC-5_at 411.6 P 0.000169
AFFX-BioC-3_at 253.7 P 0.000052
AFFX-BioDn-5_at 279.3 P 0.000754
AFFX-BioDn-3_at 987.5 P 0.000199
AFFX-CreX-5_at 1928.5 P 0.000044
AFFX-CreX-3_at 2032.8 P 0.000044
AFFX-BioB-5_st 48.6 A 0.156732
AFFX-BioB-M_st 4.6 A 0.883887
AFFX-BioB-3_st 6.1 A 0.941556
AFFX-BioC-5_st 5.8 A 0.971543
AFFX-BioC-3_st 2.5 A 0.994435
AFFX-BioDn-5_st 29.3 A 0.300606
AFFX-BioDn-3_st 10.8 A 0.645547

Total number of rows: 8799

Table truncated, full table size 248 Kbytes.




Supplementary data files not provided

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