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Sample GSM699337 Query DataSets for GSM699337
Status Public on Dec 31, 2012
Title T24_rep1
Sample type RNA
 
Source name T24_rep1
Organism Homo sapiens
Characteristics sensitivity to hedgehog: Sensitive
cell line: T24
Extracted molecule total RNA
Extraction protocol Total RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN Rneasy mini kit. Total RNA was quantified with a Nanodrop 8000 Spectrophotometer and quality control was performed with an Agilent Bioanalyser 2100 using the Agilent RNA 6000 Nani kit.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion Illumina TotalPrep Amplification Kit.
 
Hybridization protocol Standar Illumina hybridization protocol
Scan protocol Standar Illumina scanning protocol
Description Replicate 1
Data processing Quantile normalization algorithm were used to normalised the values of the probe sets within each sample. The software used for normalization was GeneSpring GX v11.0, Agilent Technologies Inc.
 
Submission date Mar 29, 2011
Last update date Dec 31, 2012
Contact name Avencia Sanchez-Mejias
E-mail(s) asmejias@med.miami.edu
Phone 3057789602
Organization name University of Miami
Department Surgery
Lab Robbins
Street address 1600 NW 10th Ave
City Miami
State/province FL
ZIP/Postal code 33136
Country USA
 
Platform ID GPL10558
Series (1)
GSE28255 Gene expression analysis in bladder cancer cells lines

Data table header descriptions
ID_REF
VALUE Quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1725881 -0.06632328 0.63247
ILMN_1910180 0.084941864 0.97532
ILMN_1804174 -0.07216501 0.44026
ILMN_1796063 -0.21492386 1
ILMN_3284771 0.13186598 0.65195
ILMN_3208259 0.09248352 0.76104
ILMN_1811966 0.006341457 0.9961
ILMN_1668162 -0.08272505 0.02338
ILMN_1715600 0.35467672 0.95974
ILMN_1912287 -0.019660473 0.74805
ILMN_1793729 0.018919945 0.9961
ILMN_2296644 0.084842205 0.31169
ILMN_1711283 -0.08910465 0.72857
ILMN_1682799 -0.2517395 1
ILMN_3305563 -0.049248695 0.53766
ILMN_3228954 0.063682556 0.74026
ILMN_3243894 0.07633972 0.56753
ILMN_3246479 -0.21656561 0.29091
ILMN_1665311 -0.048034668 0.05714
ILMN_1657235 0.04350519 0.67273

Total number of rows: 47228

Table truncated, full table size 1421 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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