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Sample GSM712769 Query DataSets for GSM712769
Status Public on Apr 22, 2011
Title BSKO 1
Sample type RNA
 
Source name Brain of BSKO mice
Organism Mus musculus
Characteristics gender: Males
strain: C57/B6
age: 3 months old
tissue: Brain
Extracted molecule total RNA
Extraction protocol Trizol, according to manufacturer’s manual, followed by purification with Quigen RNA easy kit.
Label Cy3
Label protocol Standard protocol recommended by manufacturer Affymetrix
 
Hybridization protocol Standard protocol recommended by manufacturer Affymetrix
Scan protocol Standard protocol recommended by manufacturer Affymetrix
Data processing We used Agilent GeneSpring GX v.11.0 for the analysis of the data. We used Robust Multichip Average (RMA) algorithm as the initial method for chip summarization.
 
Submission date Apr 21, 2011
Last update date Apr 22, 2011
Contact name Sergiy Libert
E-mail(s) libert@mit.edu
Phone 617-258-7360
Organization name MIT
Street address 77 Mass ave
City Cambridge
State/province MA
ZIP/Postal code 02139
Country USA
 
Platform ID GPL8321
Series (1)
GSE28790 SIRT1 impact on global gene expression in the brain

Data table header descriptions
ID_REF
VALUE log RMA normalized signal

Data table
ID_REF VALUE
AFFX-BioB-5_at -0.098856926
AFFX-BioB-M_at -0.064959526
AFFX-BioB-3_at -0.04889393
AFFX-BioC-5_at -0.06993103
AFFX-BioC-3_at -0.049456596
AFFX-BioDn-5_at -0.14659691
AFFX-BioDn-3_at -0.01703167
AFFX-CreX-5_at -0.058629036
AFFX-CreX-3_at -0.003842354
AFFX-DapX-5_at 0.17391944
AFFX-DapX-M_at -0.03798175
AFFX-DapX-3_at -0.05071926
AFFX-LysX-5_at 0.15634918
AFFX-LysX-M_at -0.04306841
AFFX-LysX-3_at -0.010756254
AFFX-PheX-5_at 0.04468417
AFFX-PheX-M_at 0.018027544
AFFX-PheX-3_at -0.013906479
AFFX-ThrX-5_at -0.03666234
AFFX-ThrX-M_at 0.055372953

Total number of rows: 22690

Table truncated, full table size 517 Kbytes.




Supplementary file Size Download File type/resource
GSM712769.CEL.gz 2.1 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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