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Sample GSM712797 Query DataSets for GSM712797
Status Public on Apr 22, 2011
Title WT 1
Sample type RNA
 
Source name Brain of WT mice
Organism Mus musculus
Characteristics gender: Males
strain: C57/B6
age: 3 months old
tissue: Brain
Extracted molecule total RNA
Extraction protocol Trizol, according to manufacturer’s manual, followed by purification with Quigen RNA easy kit.
Label Cy3
Label protocol Standard protocol recommended by manufacturer Affymetrix
 
Hybridization protocol Standard protocol recommended by manufacturer Affymetrix
Scan protocol Standard protocol recommended by manufacturer Affymetrix
Data processing We used Agilent GeneSpring GX v.11.0 for the analysis of the data. We used Robust Multichip Average (RMA) algorithm as the initial method for chip summarization.
 
Submission date Apr 21, 2011
Last update date Apr 22, 2011
Contact name Sergiy Libert
E-mail(s) libert@mit.edu
Phone 617-258-7360
Organization name MIT
Street address 77 Mass ave
City Cambridge
State/province MA
ZIP/Postal code 02139
Country USA
 
Platform ID GPL8321
Series (1)
GSE28790 SIRT1 impact on global gene expression in the brain

Data table header descriptions
ID_REF
VALUE log RMA normalized signal

Data table
ID_REF VALUE
AFFX-BioB-5_at 0.098856926
AFFX-BioB-M_at 0.16511917
AFFX-BioB-3_at 0.1556797
AFFX-BioC-5_at 0.12049866
AFFX-BioC-3_at 0.15950966
AFFX-BioDn-5_at 0.18476391
AFFX-BioDn-3_at 0.2320652
AFFX-CreX-5_at 0.055563927
AFFX-CreX-3_at 0.09981823
AFFX-DapX-5_at -0.16578412
AFFX-DapX-M_at 0.03239894
AFFX-DapX-3_at 0.05436349
AFFX-LysX-5_at -0.045201063
AFFX-LysX-M_at -0.011830568
AFFX-LysX-3_at -0.18832183
AFFX-PheX-5_at -0.13661838
AFFX-PheX-M_at 0.012988806
AFFX-PheX-3_at 0.013906479
AFFX-ThrX-5_at -0.013181448
AFFX-ThrX-M_at -0.116334915

Total number of rows: 22690

Table truncated, full table size 518 Kbytes.




Supplementary file Size Download File type/resource
GSM712797.CEL.gz 2.1 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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