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Sample GSM712798 Query DataSets for GSM712798
Status Public on Apr 22, 2011
Title BSKO 2
Sample type RNA
 
Source name Brain of BSKO mice
Organism Mus musculus
Characteristics gender: Males
strain: C57/B6
age: 3 months old
tissue: Brain
Extracted molecule total RNA
Extraction protocol Trizol, according to manufacturer’s manual, followed by purification with Quigen RNA easy kit.
Label Cy3
Label protocol Standard protocol recommended by manufacturer Affymetrix
 
Hybridization protocol Standard protocol recommended by manufacturer Affymetrix
Scan protocol Standard protocol recommended by manufacturer Affymetrix
Data processing We used Agilent GeneSpring GX v.11.0 for the analysis of the data. We used Robust Multichip Average (RMA) algorithm as the initial method for chip summarization.
 
Submission date Apr 21, 2011
Last update date Apr 22, 2011
Contact name Sergiy Libert
E-mail(s) libert@mit.edu
Phone 617-258-7360
Organization name MIT
Street address 77 Mass ave
City Cambridge
State/province MA
ZIP/Postal code 02139
Country USA
 
Platform ID GPL8321
Series (1)
GSE28790 SIRT1 impact on global gene expression in the brain

Data table header descriptions
ID_REF
VALUE log RMA normalized signal

Data table
ID_REF VALUE
AFFX-BioB-5_at 0.8138132
AFFX-BioB-M_at 0.7460642
AFFX-BioB-3_at 0.826766
AFFX-BioC-5_at 0.48096657
AFFX-BioC-3_at 0.6411238
AFFX-BioDn-5_at 0.221138
AFFX-BioDn-3_at 0.052412987
AFFX-CreX-5_at -0.03673649
AFFX-CreX-3_at -0.065050125
AFFX-DapX-5_at 0.7423272
AFFX-DapX-M_at 0.1387062
AFFX-DapX-3_at 0.70192933
AFFX-LysX-5_at 0.37378192
AFFX-LysX-M_at 0.35620594
AFFX-LysX-3_at 0.16465068
AFFX-PheX-5_at 0.6509762
AFFX-PheX-M_at 0.21118546
AFFX-PheX-3_at 0.6868453
AFFX-ThrX-5_at 0.8933847
AFFX-ThrX-M_at 0.8258009

Total number of rows: 22690

Table truncated, full table size 502 Kbytes.




Supplementary file Size Download File type/resource
GSM712798.CEL.gz 2.0 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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