NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM712800 Query DataSets for GSM712800
Status Public on Apr 22, 2011
Title BSKO 3
Sample type RNA
 
Source name Brain of BSKO mice
Organism Mus musculus
Characteristics gender: Males
strain: C57/B6
age: 3 months old
tissue: Brain
Extracted molecule total RNA
Extraction protocol Trizol, according to manufacturer’s manual, followed by purification with Quigen RNA easy kit.
Label Cy3
Label protocol Standard protocol recommended by manufacturer Affymetrix
 
Hybridization protocol Standard protocol recommended by manufacturer Affymetrix
Scan protocol Standard protocol recommended by manufacturer Affymetrix
Data processing We used Agilent GeneSpring GX v.11.0 for the analysis of the data. We used Robust Multichip Average (RMA) algorithm as the initial method for chip summarization.
 
Submission date Apr 21, 2011
Last update date Apr 22, 2011
Contact name Sergiy Libert
E-mail(s) libert@mit.edu
Phone 617-258-7360
Organization name MIT
Street address 77 Mass ave
City Cambridge
State/province MA
ZIP/Postal code 02139
Country USA
 
Platform ID GPL8321
Series (1)
GSE28790 SIRT1 impact on global gene expression in the brain

Data table header descriptions
ID_REF
VALUE log RMA normalized signal

Data table
ID_REF VALUE
AFFX-BioB-5_at -0.3153181
AFFX-BioB-M_at -0.270936
AFFX-BioB-3_at -0.27117538
AFFX-BioC-5_at -0.25251675
AFFX-BioC-3_at -0.24133205
AFFX-BioDn-5_at -0.16050434
AFFX-BioDn-3_at -0.110014915
AFFX-CreX-5_at -0.123143196
AFFX-CreX-3_at -0.1121006
AFFX-DapX-5_at -0.11659145
AFFX-DapX-M_at 0.10304403
AFFX-DapX-3_at -0.12981057
AFFX-LysX-5_at 0.04778266
AFFX-LysX-M_at 0.011830807
AFFX-LysX-3_at -0.11755991
AFFX-PheX-5_at -0.064808846
AFFX-PheX-M_at -0.12266612
AFFX-PheX-3_at 0.05440092
AFFX-ThrX-5_at 0.06643343
AFFX-ThrX-M_at -0.08611369

Total number of rows: 22690

Table truncated, full table size 514 Kbytes.




Supplementary file Size Download File type/resource
GSM712800.CEL.gz 2.1 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap