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Sample GSM712802 Query DataSets for GSM712802
Status Public on Apr 22, 2011
Title BSKO 4
Sample type RNA
 
Source name Brain of BSKO mice
Organism Mus musculus
Characteristics gender: Males
strain: C57/B6
age: 3 months old
tissue: Brain
Extracted molecule total RNA
Extraction protocol Trizol, according to manufacturer’s manual, followed by purification with Quigen RNA easy kit.
Label Cy3
Label protocol Standard protocol recommended by manufacturer Affymetrix
 
Hybridization protocol Standard protocol recommended by manufacturer Affymetrix
Scan protocol Standard protocol recommended by manufacturer Affymetrix
Data processing We used Agilent GeneSpring GX v.11.0 for the analysis of the data. We used Robust Multichip Average (RMA) algorithm as the initial method for chip summarization.
 
Submission date Apr 21, 2011
Last update date Apr 22, 2011
Contact name Sergiy Libert
E-mail(s) libert@mit.edu
Phone 617-258-7360
Organization name MIT
Street address 77 Mass ave
City Cambridge
State/province MA
ZIP/Postal code 02139
Country USA
 
Platform ID GPL8321
Series (1)
GSE28790 SIRT1 impact on global gene expression in the brain

Data table header descriptions
ID_REF
VALUE log RMA normalized signal

Data table
ID_REF VALUE
AFFX-BioB-5_at -0.19230938
AFFX-BioB-M_at -0.17009544
AFFX-BioB-3_at -0.1968441
AFFX-BioC-5_at -0.16112423
AFFX-BioC-3_at -0.1335125
AFFX-BioDn-5_at -0.14931393
AFFX-BioDn-3_at -0.13352108
AFFX-CreX-5_at -0.115216255
AFFX-CreX-3_at -0.08395195
AFFX-DapX-5_at -0.010427713
AFFX-DapX-M_at 0.04630351
AFFX-DapX-3_at -0.043821335
AFFX-LysX-5_at 0.0122087
AFFX-LysX-M_at 0.081184626
AFFX-LysX-3_at 0.010756493
AFFX-PheX-5_at 0.01485157
AFFX-PheX-M_at 0.09603548
AFFX-PheX-3_at 0.15062714
AFFX-ThrX-5_at -0.18760395
AFFX-ThrX-M_at -0.028461933

Total number of rows: 22690

Table truncated, full table size 516 Kbytes.




Supplementary file Size Download File type/resource
GSM712802.CEL.gz 2.1 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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