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Sample GSM71378 Query DataSets for GSM71378
Status Public on Dec 22, 2005
Title 3-Methylcholanthrene treated Rat (1 Day)
Sample type RNA
 
Channel 1
Source name treated liver excised one day after 3-Methylcholanthrene treatemen
Organism Rattus norvegicus
Characteristics Tissue: Liver
Duration: 1 Day
Treatment protocol Rats were treated with 3-methylcholanthrene (MC) (100 umol/kg) in corn oil (CO) (2 ml/kg)or were given equal volumes of CO, i.p., once daily for 4 days.
Extracted molecule total RNA
Label cy5
Label protocol http://edge.oncology.wisc.edu/protocols/genisphere50kit.php
 
Channel 2
Source name Vehicle-Treated Control
Organism Rattus norvegicus
Characteristics Tissue: Liver
Duration: 1 Day
Extracted molecule total RNA
Label cy3
Label protocol http://edge.oncology.wisc.edu/protocols/genisphere50kit.php
 
 
Description Following hybridization, the chips were scanned using Agilent Microarray scanner (model G2565BA (Agilent, Palo Alto, CA), and the data were analyzed using Agilent Feature Extraction, followed by importing the information into MySQL databases. Normalization was performed by the LOWESS method in the Feature Extraction Software. Dye-Swap performed on each array.
Data processing this represent the natural log of the average of the trimmed mean for the six replicates on each of the arrays used in the dye swap
 
Submission date Aug 22, 2005
Last update date Sep 06, 2005
Contact name Aaron Vollrath
E-mail(s) aaron.vollrath@gmail.com
Phone (608)262-1209
Organization name McArdle Laboratory
Street address 1400 University Ave
City Madison
State/province WI
ZIP/Postal code 53706
Country USA
 
Platform ID GPL2769
Series (1)
GSE3175 3-Methylcholanthrene treated Rat

Data table header descriptions
ID_REF
VALUE this represent the natural log of the average of the trimmed mean for the six replicates on each of the arrays used in the dye swap

Data table
ID_REF VALUE
1 -0.069238707933363
2 0
3 0
4 0
5 -0.12960356379461
6 0
7 0.75438479093109
8 0
9 0.31908189741713
10 0
11 0
12 0
13 0.29729695100751
14 0
15 0
16 0
17 0
18 0
19 0
20 -0.36323865557609

Total number of rows: 4572

Table truncated, full table size 50 Kbytes.




Supplementary data files not provided

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