GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM71607 Query DataSets for GSM71607
Status Public on Dec 01, 2005
Title MCF7_Normoxia_3_Illumina
Sample type RNA
Source name MCF7, Normoxia 21% Oxygen
Organism Homo sapiens
Characteristics human breast carcinoma MCF7 cells
Treatment protocol Normoxia (21% oxygen)
Growth protocol Media: DMEM, 2mM L-Glutamine and 10% Fetal Bovine Serum
Extracted molecule total RNA
Extraction protocol Absolutely RNA RT-PCR Miniprep Kit(Stratagene)
Label Biotin-Labeled cRNA
Label protocol Refer to the Illumina Gene Expression System Manual
Hybridization protocol Refer to the Illumina Gene Expression System Manual
Scan protocol Refer to the Illumina Gene Expression System Manual
Description MCF7 cells grown in Normoxia
Data processing Background was subtracted using the Illumina Studio, intensities were shifted to a minimum value of 20 and quantile normalization was performed using functions within R.
Submission date Aug 23, 2005
Last update date Aug 24, 2005
Contact name Ioannis Ragoussis
Organization name University of Oxford
Department The Wellcome Trust Centre for Human Genetics
Lab Genomics
Street address Roosevelt Drive
City Oxford
ZIP/Postal code OX3 7BN
Country United Kingdom
Platform ID GPL2507
Series (1)
GSE3188 Hypoxic regulation of gene expression is dominated by the HIF system and can be mimicked by DMOG

Data table header descriptions
VALUE Signal, quantile normalization performed using functions within R

Data table
GI_10047089-S 6.40906738
GI_10047091-S 6.759426143
GI_10047093-S 10.02813088
GI_10047099-S 6.970696231
GI_10047103-S 11.24540754
GI_10047105-S 7.006778673
GI_10047121-S 6.455965606
GI_10047123-S 11.70895616
GI_10047133-A 6.297563457
GI_10047133-I 6.43771438
GI_10092578-S 6.552260065
GI_10092585-S 7.943034623
GI_10092596-S 8.850686603
GI_10092600-S 10.91283022
GI_10092602-S 6.243140983
GI_10092603-S 6.854490195
GI_10092611-A 9.749701264
GI_10092616-S 8.337953189
GI_10092618-S 11.99391308
GI_10092638-S 7.904052024

Total number of rows: 47293

Table truncated, full table size 1139 Kbytes.

Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap