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Sample GSM71934 Query DataSets for GSM71934
Status Public on Aug 26, 2005
Title paf1 deletion 2
Sample type RNA
 
Source name whole cell
Organism Saccharomyces cerevisiae
Characteristics paf1 deletion strain
Extracted molecule total RNA
Extraction protocol Whole cell extracts were prepared from liquid cultures of a paf1 strain grown to mid-log phase in YPD medium with 4% glucose
Label biotin
Label protocol Approximately 8 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description paf1 deletion
Data processing Affymetrix Microarray Suite version 4.0
 
Submission date Aug 25, 2005
Last update date Aug 25, 2005
Contact name Judith A. Jaehning
E-mail(s) Judith.Jaehning@uchsc.edu
Organization name UCHSC
Department Biochemistry and Molecular Genetics
Street address 4200 E. 9th Avenue Campus Box B-121
City Denver
State/province CO
ZIP/Postal code 80262
Country USA
 
Platform ID GPL90
Series (1)
GSE3200 Post-Transcriptional Role for the Yeast Paf1-RNA Polymerase II Complex is Revealed by Identification of Primary Targets

Data table header descriptions
ID_REF
VALUE hybridization intensity-ratio of perfect match/mismatch intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
ID_REF VALUE ABS_CALL
AFFX-MurIL2_at -0.66 A
AFFX-MurIL10_at -0.73 A
AFFX-MurIL4_at 0.01 A
AFFX-MurFAS_at 0.37 A
AFFX-BioB-5_at 3.24 P
AFFX-BioB-M_at 3.77 P
AFFX-BioB-3_at 3.04 P
AFFX-BioC-5_at 5.68 P
AFFX-BioC-3_at 5.14 P
AFFX-BioDn-5_at 6.22 P
AFFX-BioDn-3_at 7.24 P
AFFX-CreX-5_at 8.35 P
AFFX-CreX-3_at 8.48 P
AFFX-BioB-5_st 0.56 A
AFFX-BioB-M_st -0.49 A
AFFX-BioB-3_st -0.99 A
AFFX-BioC-5_st -0.83 A
AFFX-BioC-3_st -0.49 A
AFFX-BioDn-5_st -0.55 A
AFFX-BioDn-3_st 0.69 A

Total number of rows: 9335

Table truncated, full table size 141 Kbytes.




Supplementary data files not provided

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