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Sample GSM71993 Query DataSets for GSM71993
Status Public on Aug 26, 2006
Title FACS-purified B cells_wildtype_non-infected_rep2
Sample type RNA
Source name B cells - wildtype mice - not infected
Organism Mus musculus
Characteristics Strain: 129SV/EV
Gender: Female
Age: 8-12weeks
Tissue: Lymph node B cell

Biomaterial provider B&K Universal Ltd.- U. K.
Treatment protocol None
Growth protocol Mice were bred and held under conventional housing conditions in filtertop cages
Extracted molecule total RNA
Extraction protocol RNAeasy kit (Qiagen)
Label Biotin
Label protocol Bioarray (Enzo)
Hybridization protocol Hybridized washed and stained with streptavidin-PE per the manufacturer's protocol (Affymetrix).
Scan protocol Affymetrix GeneChip Scanner 3000 and GCOS software using target value = 251
Description B cells from control mice (uninfected wild type)
Array 16 - 16.N.B._473.CEL
Data processing The dataset was preprocessed using the following procedures: (1) background correction; (2) normalization using the quantile method (Bolstad et al. 2003); (3) summarization of probe set values using the RMA (Robust Multi-array Analysis) method, which fits a specified robust linear model to the probe level data. The abovementioned procedures were performed using the Bioconductor package “affyPLM”.
Submission date Aug 25, 2005
Last update date Aug 28, 2018
Contact name Michael E. Salazar
Phone (415) 514-4371
Organization name University of California, San Francisco
Lab Functional Genomics Core Laboratories
Street address 1550 Fourth Street, RM 545
City San Francisco
State/province CA
ZIP/Postal code 94158
Country USA
Platform ID GPL1261
Series (1)
GSE3203 Influenza virus infection-induced gene expression changes of regional B cells are mediated in part through type I IFN
Reanalyzed by GSE119085

Data table header descriptions
VALUE RMA normalized intensity

Data table
1415670_at 8.949
1415671_at 10.819
1415672_at 11.436
1415673_at 8.324
1415674_a_at 8.955
1415675_at 9.315
1415676_a_at 11.769
1415677_at 8.588
1415678_at 10.343
1415679_at 11.451
1415680_at 9.877
1415681_at 8.971
1415682_at 8.781
1415683_at 10.235
1415684_at 7.992
1415685_at 8.21
1415686_at 9.949
1415687_a_at 11.902
1415688_at 10.889
1415689_s_at 9.355

Total number of rows: 45101

Table truncated, full table size 764 Kbytes.

Supplementary file Size Download File type/resource
GSM71993.CEL.gz 6.3 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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