NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM72000 Query DataSets for GSM72000
Status Public on Aug 26, 2006
Title FACS-purified B cells_IFNAR1-/-_influenza-infected_rep1
Sample type RNA
 
Source name B cells - IFNAR1-/-mice - influenza-infected
Organism Mus musculus
Characteristics Strain: 129SV/EV
Gender: Female
Age: 8-12weeks
Tissue: Mediastinal lymph node B cell
Influenza A/Mem71 48h

Biomaterial provider B&K Universal Ltd.- U. K.
Treatment protocol Infected with influenza A/Mem71 virus for 2 days
Growth protocol Mice were bred and held under conventional housing conditions in filtertop cages
Extracted molecule total RNA
Extraction protocol RNAeasy kit (Qiagen)
Label Biotin
Label protocol Bioarray (Enzo)
 
Hybridization protocol Hybridized washed and stained with streptavidin-PE per the manufacturer's protocol (Affymetrix).
Scan protocol Affymetrix GeneChip Scanner 3000 and GCOS software using target value = 258
Description B cells from flu-infected mice (IFNR knockout)
Array 22 - 22.N.B._561.CEL
Data processing The dataset was preprocessed using the following procedures: (1) background correction; (2) normalization using the quantile method (Bolstad et al. 2003); (3) summarization of probe set values using the RMA (Robust Multi-array Analysis) method, which fits a specified robust linear model to the probe level data. The abovementioned procedures were performed using the Bioconductor package “affyPLM”.
 
Submission date Aug 25, 2005
Last update date Aug 28, 2018
Contact name Michael E. Salazar
Phone (415) 514-4371
URL http://arrays.ucsf.edu
Organization name University of California, San Francisco
Department
Lab Functional Genomics Core Laboratories
Street address 1550 Fourth Street, RM 545
City San Francisco
State/province CA
ZIP/Postal code 94158
Country USA
 
Platform ID GPL1261
Series (1)
GSE3203 Influenza virus infection-induced gene expression changes of regional B cells are mediated in part through type I IFN
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE RMA normalized intensity

Data table
ID_REF VALUE
1415670_at 8.55
1415671_at 10.016
1415672_at 11.605
1415673_at 7.76
1415674_a_at 8.612
1415675_at 8.641
1415676_a_at 10.669
1415677_at 7.623
1415678_at 10.265
1415679_at 10.427
1415680_at 9.837
1415681_at 9.373
1415682_at 8.129
1415683_at 10.221
1415684_at 8.207
1415685_at 8.732
1415686_at 10.233
1415687_a_at 11.288
1415688_at 11.045
1415689_s_at 10.062

Total number of rows: 45101

Table truncated, full table size 764 Kbytes.




Supplementary file Size Download File type/resource
GSM72000.CEL.gz 6.2 Mb (ftp)(http) CEL
Raw data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap