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Sample GSM72912 Query DataSets for GSM72912
Status Public on Oct 06, 2005
Title Myospheres 1, chip MOE430B
Sample type RNA
 
Source name myospheres, muscle (hind leg)
Organism Mus musculus
Characteristics Strain: Balb/c
Gender: Male
Growth protocol Growth medium: neurocult
Media supplements: bf6f, LIF, B27, EGF
Culture conditions: 37C +CO2
Extracted molecule total RNA
Extraction protocol RNA prep method: RNEasy
Cell purification method: Enriched with Sca1 antigen
Label Biotin
 
Description This sample was analyzed as part of the Stem Cell Genomics Project (http://www.scgp.ca:8080/StemBase/). The biological material was submitted to the Ontario Genomics Innovation Centre (http://www.ottawagenomecenter.ca/) by Dr. Michael Rudnicki (mrudnicki@ohri.ca; 501 Smyth Road) for analysis.
Stembase Experiment ID: E209
Stembase Experiment ID link: http://www.scgp.ca:8080/StemBase/?path=/browse/experiment&id=209
SCGP Sample ID: S274
SCGP Sample ID link: http://www.scgp.ca:8080/StemBase/?path=/browse/experiment&id=209#SAMPLE_284
Short description: Cells were isolated from muscle (hind leg) of Balb/c mouse (male). Then cells were enriched at FACS by using Sca1 antigen. Cells were grown 4 days in NSC medium, passaged and RNA isolated. Cells were at passage 1.
Analysis requested: Murinr chip MOE 430 A, B
RNA concentration: small sample
Num cells for RNA prep: from 2E+06 cells (FACS enrichment)
Sample volume: 5uL
Data processing Calculated using the MAS5 algorithm where sc=1500, tau=0.015, alpha1=0.04, and alpla2=0.06
 
Submission date Aug 30, 2005
Last update date Jan 19, 2006
Organization Ottawa Hospital Research Institute
Phone (613) 737-8899 -73255
Department Cellular and Molecular Medicine
Lab Ottawa Bioinformatics Core Facility
Street address 501 Smyth Rd.
City Ottawa
State/province ON
ZIP/Postal code K1H 8L6
Country Canada
 
Platform ID GPL340
Series (1)
GSE3235 Sca1+ primary myospheres

Data table header descriptions
ID_REF
VALUE 'signal' a measure of the abundance of a transcript. Calculated using the MAS5 algorithm where sc=1500, tau=0.015, alpha1=0.04, and alpla2=0.06.
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 11276.3 P 0.000972149
AFFX-BioB-M_at 15278.7 P 4.42873e-05
AFFX-BioB-3_at 9021.51 P 4.42873e-05
AFFX-BioC-5_at 31538 P 0.00010954
AFFX-BioC-3_at 17804.4 P 5.16732e-05
AFFX-BioDn-5_at 18678.1 P 0.00010954
AFFX-BioDn-3_at 113330 P 6.02111e-05
AFFX-CreX-5_at 240914 P 4.42873e-05
AFFX-CreX-3_at 411341 P 4.42873e-05
AFFX-DapX-5_at 268319 P 4.42873e-05
AFFX-DapX-M_at 700346 P 4.42873e-05
AFFX-DapX-3_at 807250 P 4.42873e-05
AFFX-LysX-5_at 154576 P 4.42873e-05
AFFX-LysX-M_at 647727 P 4.42873e-05
AFFX-LysX-3_at 720138 P 4.42873e-05
AFFX-PheX-5_at 53089.4 P 4.42873e-05
AFFX-PheX-M_at 149078 P 4.42873e-05
AFFX-PheX-3_at 705394 P 4.42873e-05
AFFX-ThrX-5_at 7068.26 P 0.000581214
AFFX-ThrX-M_at 21352.4 P 5.16732e-05

Total number of rows: 22575

Table truncated, full table size 665 Kbytes.




Supplementary file Size Download File type/resource
GSM72912.CEL.gz 3.1 Mb (ftp)(http) CEL
GSM72912.EXP.gz 508 b (ftp)(http) EXP

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