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Sample GSM72914 Query DataSets for GSM72914
Status Public on Oct 06, 2005
Title Myospheres 2, chip MOE430B
Sample type RNA
 
Source name myospheres, muscle (hind leg)
Organism Mus musculus
Characteristics Strain: Balb/c
Gender: Male
Growth protocol Growth medium: neurocult
Media supplements: bf6f, LIF, B27, EGF
Culture conditions: 37C +CO2
Extracted molecule total RNA
Extraction protocol RNA prep method: RNEasy
Cell purification method: Enriched with Sca1 antigen
Label Biotin
 
Description This sample was analyzed as part of the Stem Cell Genomics Project (http://www.scgp.ca:8080/StemBase/). The biological material was submitted to the Ontario Genomics Innovation Centre (http://www.ottawagenomecenter.ca/) by Dr. Michael Rudnicki (mrudnicki@ohri.ca; 501 Smyth Road) for analysis.
Stembase Experiment ID: E209
Stembase Experiment ID link: http://www.scgp.ca:8080/StemBase/?path=/browse/experiment&id=209
SCGP Sample ID: S274
SCGP Sample ID link: http://www.scgp.ca:8080/StemBase/?path=/browse/experiment&id=209#SAMPLE_284
Short description: Cells were isolated from muscle (hind leg) of Balb/c mouse (male). Then cells were enriched at FACS by using Sca1 antigen. Cells were grown 4 days in NSC medium, passaged and RNA isolated. Cells were at passage 1.
Analysis requested: Murinr chip MOE 430 A, B
RNA concentration: small sample
Num cells for RNA prep: from 2E+06 cells (FACS enrichment)
Sample volume: 5uL
Data processing Calculated using the MAS5 algorithm where sc=1500, tau=0.015, alpha1=0.04, and alpla2=0.06
 
Submission date Aug 30, 2005
Last update date Jan 19, 2006
Organization Ottawa Hospital Research Institute
Phone (613) 737-8899 -73255
Department Cellular and Molecular Medicine
Lab Ottawa Bioinformatics Core Facility
Street address 501 Smyth Rd.
City Ottawa
State/province ON
ZIP/Postal code K1H 8L6
Country Canada
 
Platform ID GPL340
Series (1)
GSE3235 Sca1+ primary myospheres

Data table header descriptions
ID_REF
VALUE 'signal' a measure of the abundance of a transcript. Calculated using the MAS5 algorithm where sc=1500, tau=0.015, alpha1=0.04, and alpla2=0.06.
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 19280.5 P 0.000509415
AFFX-BioB-M_at 26040.2 P 4.42873e-05
AFFX-BioB-3_at 16038.6 P 0.000169227
AFFX-BioC-5_at 41286.4 P 5.16732e-05
AFFX-BioC-3_at 30107.2 P 5.16732e-05
AFFX-BioDn-5_at 28625 P 8.14279e-05
AFFX-BioDn-3_at 158911 P 5.16732e-05
AFFX-CreX-5_at 334128 P 4.42873e-05
AFFX-CreX-3_at 514532 P 4.42873e-05
AFFX-DapX-5_at 308982 P 4.42873e-05
AFFX-DapX-M_at 820432 P 4.42873e-05
AFFX-DapX-3_at 969423 P 4.42873e-05
AFFX-LysX-5_at 127904 P 4.42873e-05
AFFX-LysX-M_at 677547 P 4.42873e-05
AFFX-LysX-3_at 729966 P 4.42873e-05
AFFX-PheX-5_at 42115.4 P 4.42873e-05
AFFX-PheX-M_at 100713 P 4.42873e-05
AFFX-PheX-3_at 780771 P 4.42873e-05
AFFX-ThrX-5_at 10761.2 P 0.00110197
AFFX-ThrX-M_at 20802.7 P 0.00010954

Total number of rows: 22575

Table truncated, full table size 663 Kbytes.




Supplementary file Size Download File type/resource
GSM72914.CEL.gz 3.0 Mb (ftp)(http) CEL
GSM72914.EXP.gz 510 b (ftp)(http) EXP

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