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Sample GSM729904 Query DataSets for GSM729904
Status Public on Dec 31, 2011
Title MF1_4_RA
Sample type RNA
 
Source name right atrium
Organism Mus musculus
Characteristics strain: MF1
age: 12 months
tissue: Right atrium
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy micro fibrous tissue kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion Illumina TotalPrep RNA Amplification Kit
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 4
Data processing The data were normalised using quantile normalisation with Genespring GX 11.5.1
 
Submission date May 24, 2011
Last update date Dec 31, 2011
Contact name Peter Christian Kahr
Organization name University Hospital Münster
Street address Grevener Straße 1
City Münster
ZIP/Postal code 48149
Country Germany
 
Platform ID GPL6885
Series (1)
GSE29500 Genome-wide analysis of atrial left-right differences in two different mouse strains

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1250052 -0.03822422 0.96742
ILMN_3122480 -0.1481328 0.02632
ILMN_2599935 -0.3223853 100
ILMN_2675543 0.006611347 0.78571
ILMN_2686883 -0.043772697 0.35213
ILMN_2751818 -0.060533047 0.17669
ILMN_2728634 -0.017631054 0.76441
ILMN_3040515 -0.16265774 0.12406
ILMN_2711608 -0.061601162 0.30451
ILMN_1232875 0.13727474 0.79198
ILMN_1258507 0.09828234 0.6391
ILMN_2746142 -0.01845169 0.29574
ILMN_1252690 -0.058059216 0.74561
ILMN_2655499 0.003109932 0.3396
ILMN_1252870 -0.06854248 0.46491
ILMN_1248179 0.011760235 0.33459
ILMN_2649955 -0.21493816 0.99123
ILMN_2628708 0.08452463 0.88847
ILMN_3024781 -0.12573051 0.04762
ILMN_2705628 0.6713824 100

Total number of rows: 25697

Table truncated, full table size 784 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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