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Sample GSM729909 Query DataSets for GSM729909
Status Public on Dec 31, 2011
Title Swiss Agouti_1_RA
Sample type RNA
 
Source name right atrium
Organism Mus musculus
Characteristics strain: Swiss Agouti
age: 12 months
tissue: Right atrium
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy micro fibrous tissue kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion Illumina TotalPrep RNA Amplification Kit
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 1
Data processing The data were normalised using quantile normalisation with Genespring GX 11.5.1
 
Submission date May 24, 2011
Last update date Dec 31, 2011
Contact name Peter Christian Kahr
Organization name University Hospital Münster
Street address Grevener Straße 1
City Münster
ZIP/Postal code 48149
Country Germany
 
Platform ID GPL6885
Series (1)
GSE29500 Genome-wide analysis of atrial left-right differences in two different mouse strains

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1250052 0.04827547 0.99123
ILMN_3122480 -0.023109913 0.31579
ILMN_2599935 0.022654533 1
ILMN_2675543 -0.054641247 0.45865
ILMN_2686883 0.012138844 0.50752
ILMN_2751818 0.09380722 0.82456
ILMN_2728634 0.05785799 0.90476
ILMN_3040515 0.008728981 0.70677
ILMN_2711608 -0.005479813 0.52005
ILMN_1232875 0.011349678 0.50627
ILMN_1258507 0.14624834 0.88095
ILMN_2746142 -0.001927376 0.18421
ILMN_1252690 0.05400133 0.89599
ILMN_2655499 0.005588532 0.25313
ILMN_1252870 0.08043575 0.85714
ILMN_1248179 0.006545067 0.5188
ILMN_2649955 0.03517866 1
ILMN_2628708 0.017447948 0.50501
ILMN_3024781 -0.046603203 0.39223
ILMN_2705628 0.4476261 1

Total number of rows: 25697

Table truncated, full table size 771 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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