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Sample GSM729911 Query DataSets for GSM729911
Status Public on Dec 31, 2011
Title Swiss Agouti_3_RA
Sample type RNA
 
Source name right atrium
Organism Mus musculus
Characteristics strain: Swiss Agouti
age: 12 months
tissue: Right atrium
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy micro fibrous tissue kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion Illumina TotalPrep RNA Amplification Kit
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 3
Data processing The data were normalised using quantile normalisation with Genespring GX 11.5.1
 
Submission date May 24, 2011
Last update date Dec 31, 2011
Contact name Peter Christian Kahr
Organization name University Hospital Münster
Street address Grevener Straße 1
City Münster
ZIP/Postal code 48149
Country Germany
 
Platform ID GPL6885
Series (1)
GSE29500 Genome-wide analysis of atrial left-right differences in two different mouse strains

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1250052 0.08554506 0.99749
ILMN_3122480 0.05517769 0.66667
ILMN_2599935 0.057011127 1
ILMN_2675543 0.0889349 0.91353
ILMN_2686883 0.09353018 0.81454
ILMN_2751818 -0.06969118 0.16667
ILMN_2728634 -0.033344746 0.66792
ILMN_3040515 -0.008729458 0.63534
ILMN_2711608 -0.010155678 0.50125
ILMN_1232875 -0.01565361 0.38471
ILMN_1258507 0.11332178 0.80952
ILMN_2746142 0.12110758 0.7005
ILMN_1252690 -0.066064835 0.5213
ILMN_2655499 -0.030929565 0.12782
ILMN_1252870 0.052516937 0.79073
ILMN_1248179 -0.006545544 0.46241
ILMN_2649955 -0.24667883 0.99749
ILMN_2628708 -0.08683205 0.09023
ILMN_3024781 -0.07145262 0.28947
ILMN_2705628 0.56847763 1

Total number of rows: 25697

Table truncated, full table size 767 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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