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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Sep 01, 2005 |
| Title |
OGCsort#6 +/+, chip MOE430B |
| Sample type |
RNA |
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| Source name |
primary, bone marrow
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| Organism |
Mus musculus |
| Characteristics |
Strain: C57Bl/6
Gender: Female
Karyotype: Diploid
Defining markers: CD45+ Sca1+
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| Extracted molecule |
total RNA |
| Extraction protocol |
RNA prep method: RNeasy
Cell purification method: Cell sorting
Method for estimating purity: Flow cytometer
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| Label |
Biotin
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| Description |
This sample was analyzed as part of the Stem Cell Genomics Project (http://www.scgp.ca:8080/StemBase/). The biological material was submitted to the Ontario Genomics Innovation Centre (http://www.ottawagenomecenter.ca/) by Dr. Michael Rudnicki (mrudnicki@ohri.ca; 501 Smyth Road) for analysis.
Stembase Experiment ID: E191
Stembase Experiment ID link: http://www.scgp.ca:8080/StemBase/?path=/browse/experiment&id=191
SCGP Sample ID: S234
SCGP Sample ID link: http://www.scgp.ca:8080/StemBase/?path=/browse/experiment&id=191#SAMPLE_276
Short description: Sorted sub-populations of mouse bone marrow. Triplicates: OGCsort#1 +/+ OGCsort#5 +/+ OGCsort#6 +/+
Estimated purity: 90%
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| Data processing |
Calculated using the MAS5 algorithm where sc=1500, tau=0.015, alpha1=0.04, and alpla2=0.06
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| Submission date |
Aug 31, 2005 |
| Last update date |
Jan 19, 2006 |
| Organization |
Ottawa Hospital Research Institute |
| Phone |
(613) 737-8899 -73255
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| Department |
Cellular and Molecular Medicine
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| Lab |
Ottawa Bioinformatics Core Facility
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| Street address |
501 Smyth Rd.
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| City |
Ottawa |
| State/province |
ON |
| ZIP/Postal code |
K1H 8L6 |
| Country |
Canada |
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| Platform ID |
GPL340 |
| Series (1) |
| GSE3241 |
Sca1-CD45 sorted bone marrow |
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| Data table header descriptions |
| ID_REF |
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| VALUE |
'signal' a measure of the abundance of a transcript. Calculated using the MAS5 algorithm where sc=1500, tau=0.015, alpha1=0.04, and alpla2=0.06. |
| ABS_CALL |
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC) |
| DETECTION P-VALUE |
'detection p-value', p-value that indicates the significance level of the detection call |
| Data table |
| ID_REF |
VALUE |
ABS_CALL |
DETECTION P-VALUE |
| AFFX-BioB-5_at |
19397 |
P |
0.000296708 |
| AFFX-BioB-M_at |
31850 |
P |
4.42873e-05 |
| AFFX-BioB-3_at |
18704.3 |
P |
4.42873e-05 |
| AFFX-BioC-5_at |
39752.8 |
P |
7.00668e-05 |
| AFFX-BioC-3_at |
30730.4 |
P |
4.42873e-05 |
| AFFX-BioDn-5_at |
43018.8 |
P |
5.16732e-05 |
| AFFX-BioDn-3_at |
213041 |
P |
5.16732e-05 |
| AFFX-CreX-5_at |
482965 |
P |
4.42873e-05 |
| AFFX-CreX-3_at |
550650 |
P |
4.42873e-05 |
| AFFX-DapX-5_at |
162013 |
P |
4.42873e-05 |
| AFFX-DapX-M_at |
544595 |
P |
4.42873e-05 |
| AFFX-DapX-3_at |
627722 |
P |
4.42873e-05 |
| AFFX-LysX-5_at |
106771 |
P |
4.42873e-05 |
| AFFX-LysX-M_at |
514280 |
P |
4.42873e-05 |
| AFFX-LysX-3_at |
599092 |
P |
4.42873e-05 |
| AFFX-PheX-5_at |
78742 |
P |
4.42873e-05 |
| AFFX-PheX-M_at |
152182 |
P |
4.42873e-05 |
| AFFX-PheX-3_at |
471159 |
P |
4.42873e-05 |
| AFFX-ThrX-5_at |
6712.95 |
P |
0.000753643 |
| AFFX-ThrX-M_at |
34187.8 |
P |
4.42873e-05 |
Total number of rows: 22575
Table truncated, full table size 667 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM72993.CEL.gz |
3.1 Mb |
(ftp)(http) |
CEL |
| GSM72993.EXP.gz |
520 b |
(ftp)(http) |
EXP |
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