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Sample GSM733928 Query DataSets for GSM733928
Status Public on May 30, 2011
Title Primary MMTV-Neu Tumor N135
Sample type RNA
 
Source name Mouse Mammary Tumor
Organism Mus musculus
Characteristics strain: FvB
size: Mammary Tumor less than 1.0 cm diameter
tissue: Primary MMTV-Neu Mammary Tumor
Extracted molecule total RNA
Extraction protocol Total RNA was extracted with Trizol reagent. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Description Gene expression data from primary MMTV-Neu tumor
Data processing The data were normalised using quantile normalization with BeadStudio
 
Submission date May 29, 2011
Last update date May 30, 2011
Contact name Jeff Liu
E-mail(s) jeff.liu@utoronto.ca
Phone 416-340-4800
Organization name University Health Network
Department Princess Margaret Cancer Center
Lab Zadeh Lab
Street address 101 College Street, RM 4-601
City Toronto
State/province Ontario
ZIP/Postal code M5G 1L7
Country Canada
 
Platform ID GPL6885
Series (1)
GSE29616 Gene expression of primary MMTV-Neu tumors compared to secondary tumors generated from lin- and single tumor initiating cell (TIC) transplantation

Data table header descriptions
ID_REF
VALUE quantile normalized
N135 Detection Pval

Data table
ID_REF VALUE N135 Detection Pval
ILMN_2896528 4557.058 0
ILMN_2721178 1149.403 0
ILMN_3033922 2040.617 0
ILMN_3092673 10967.62 0
ILMN_2816356 204.3075 0
ILMN_2808939 1060.927 0
ILMN_2634564 1187.28 0
ILMN_2737647 135.8878 0.1491228
ILMN_2734484 1323.127 0
ILMN_2952292 359.9709 0
ILMN_2699078 109.29 0.7393484
ILMN_1213681 626.7847 0
ILMN_2735413 114.9635 0.5513784
ILMN_2735415 118.4076 0.443609
ILMN_2891688 791.185 0
ILMN_2637698 1954.348 0
ILMN_2674228 365.7085 0
ILMN_2601546 139.3885 0.112782
ILMN_1230831 158.6466 0.03007519
ILMN_2848071 172.7676 0.007518797

Total number of rows: 25697

Table truncated, full table size 720 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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