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Sample GSM733930 Query DataSets for GSM733930
Status Public on May 30, 2011
Title Primary MMTV-Neu Tumor N182
Sample type RNA
 
Source name Mouse Mammary Tumor
Organism Mus musculus
Characteristics strain: FvB
size: Mammary Tumor less than 1.0 cm diameter
tissue: Primary MMTV-Neu Mammary Tumor
Extracted molecule total RNA
Extraction protocol Total RNA was extracted with Trizol reagent. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Description Gene expression data from primary MMTV-Neu tumor
Data processing The data were normalised using quantile normalization with BeadStudio
 
Submission date May 29, 2011
Last update date May 30, 2011
Contact name Jeff Liu
E-mail(s) jeff.liu@utoronto.ca
Phone 416-340-4800
Organization name University Health Network
Department Princess Margaret Cancer Center
Lab Zadeh Lab
Street address 101 College Street, RM 4-601
City Toronto
State/province Ontario
ZIP/Postal code M5G 1L7
Country Canada
 
Platform ID GPL6885
Series (1)
GSE29616 Gene expression of primary MMTV-Neu tumors compared to secondary tumors generated from lin- and single tumor initiating cell (TIC) transplantation

Data table header descriptions
ID_REF
VALUE quantile normalized
N182 Detection Pval

Data table
ID_REF VALUE N182 Detection Pval
ILMN_2896528 2805.195 0
ILMN_2721178 715.1627 0
ILMN_3033922 2715.522 0
ILMN_3092673 10896.38 0
ILMN_2816356 163.0151 0.03383459
ILMN_2808939 846.1038 0
ILMN_2634564 1126.267 0
ILMN_2737647 138.9925 0.1340852
ILMN_2734484 1468.446 0
ILMN_2952292 371.5553 0
ILMN_2699078 99.65986 0.9373434
ILMN_1213681 649.0815 0
ILMN_2735413 118.3787 0.4172932
ILMN_2735415 118.1197 0.4235589
ILMN_2891688 964.5495 0
ILMN_2637698 1882.002 0
ILMN_2674228 401.6711 0
ILMN_2601546 145.9301 0.08521304
ILMN_1230831 109.4011 0.679198
ILMN_2848071 166.0537 0.02631579

Total number of rows: 25697

Table truncated, full table size 720 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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