NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM733931 Query DataSets for GSM733931
Status Public on May 30, 2011
Title Secondary MMTV-Neu Tumor WT575
Sample type RNA
 
Source name Mouse Mammary Tumor
Organism Mus musculus
Characteristics strain: FvB
size: Mammary Tumor less than 1.0 cm diameter
tissue: Secondary MMTV-Neu Mammary Tumor
Extracted molecule total RNA
Extraction protocol Total RNA was extracted with Trizol reagent. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Description Gene expression data from secondary MMTV-Neu tumor generated with lin- cells
Data processing The data were normalised using quantile normalization with BeadStudio
 
Submission date May 29, 2011
Last update date May 30, 2011
Contact name Jeff Liu
E-mail(s) jeff.liu@utoronto.ca
Phone 416-340-4800
Organization name University Health Network
Department Princess Margaret Cancer Center
Lab Zadeh Lab
Street address 101 College Street, RM 4-601
City Toronto
State/province Ontario
ZIP/Postal code M5G 1L7
Country Canada
 
Platform ID GPL6885
Series (1)
GSE29616 Gene expression of primary MMTV-Neu tumors compared to secondary tumors generated from lin- and single tumor initiating cell (TIC) transplantation

Data table header descriptions
ID_REF
VALUE quantile normalized
WT575 Detection Pval

Data table
ID_REF VALUE WT575 Detection Pval
ILMN_2896528 3366.967 0
ILMN_2721178 835.1218 0
ILMN_3033922 3145.064 0
ILMN_3092673 11065.61 0
ILMN_2816356 187.8813 0
ILMN_2808939 981.7205 0
ILMN_2634564 1236.559 0
ILMN_2737647 120.0967 0.3533835
ILMN_2734484 1220.681 0
ILMN_2952292 349.2322 0
ILMN_2699078 109.4011 0.7205514
ILMN_1213681 608.064 0
ILMN_2735413 130.5829 0.1754386
ILMN_2735415 126.7792 0.2218045
ILMN_2891688 1134.577 0
ILMN_2637698 1715.163 0
ILMN_2674228 399.5445 0
ILMN_2601546 138.0476 0.1090226
ILMN_1230831 140.9175 0.09774436
ILMN_2848071 176.2318 0.005012531

Total number of rows: 25697

Table truncated, full table size 715 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap