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Sample GSM735270 Query DataSets for GSM735270
Status Public on Jun 02, 2011
Title Prdm1-/-_3
Sample type RNA
Source name Prdm1-/-
Organism Mus musculus
Characteristics strain: Mixed
developmental stage: embryonic (E18.5)
prdm1 genotype: Villin-Cre, Prdm1CA/BEH
tissue: small intestine
Extracted molecule total RNA
Extraction protocol RNA was extracted using QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Villin-Cre, Prdm1CA/BEH biological replicate 3
Data processing Rank invariant normalisation with background subtraction using the Gene Expression Module V1.6.0 of Illumina GenomeStudio V2009.2
Submission date Jun 01, 2011
Last update date Jun 02, 2011
Contact name Arne Wyndham Mould
Phone +44 1865 285749
Organization name Oxford University
Department Pathology
Lab Robertson/Bikoff
Street address South Parks Road
City Oxford
State/province OXON
ZIP/Postal code OX1 3RE
Country United Kingdom
Platform ID GPL6887
Series (1)
GSE29658 The transcriptional repressor Blimp1/Prdm1 regulates post-natal reprogramming of intestinal enterocytes

Data table header descriptions
VALUE Rank invariant normalized with background subtraction
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2735294 107.97 0
ILMN_2417611 47.98029 0
ILMN_2545897 72.38474 0
ILMN_2762289 4.981354 0.292735
ILMN_1248788 29.38343 0
ILMN_2707227 1266.642 0
ILMN_2896528 2290.085 0
ILMN_2721178 472.0688 0
ILMN_1227723 650.0463 0
ILMN_2458837 -3.382814 0.8803419
ILMN_3033922 684.3535 0
ILMN_3092673 2110.404 0
ILMN_1230777 1234.333 0
ILMN_2730714 4157.507 0
ILMN_1246069 2650.996 0
ILMN_1232042 2.573844 0.4700855
ILMN_1243193 467.7306 0
ILMN_2524361 7.298416 0.1752137
ILMN_1233188 99.30141 0
ILMN_2543688 1145.357 0

Total number of rows: 45281

Table truncated, full table size 1320 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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