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Sample GSM73663 Query DataSets for GSM73663
Status Public on Nov 29, 2005
Title VU HNSCCV300688
Sample type RNA
 
Source name HNSCC from FFPE block
Organism Homo sapiens
Characteristics HNSCC from FFPE block
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy Mini Kit (Qiagen, Valencia, CA)
Label ENZO BioArray High Yield RNA Transcript Labeling Kit (Affymetrix, Santa Clara, CA)
 
Description HNSCC from FFPE block
Data processing quantile normalization of CEL file, PDNN (PerfectMatch) estimation, log2 transformation
 
Submission date Sep 09, 2005
Last update date Aug 28, 2018
Contact name Christine H. Chung
E-mail(s) christine.chung@vanderbilt.edu
Phone 615-322-4967
Fax 615343-7602
Organization name Vanderbilt University
Department Internal Medicine
Lab Chung
Street address 777 PRB
City Nashville
State/province TN
ZIP/Postal code 37232-6307
Country USA
 
Platform ID GPL570
Series (1)
GSE3292 Gene expression signature of HPV in head and neck squamous cell carcinoma
Relations
Reanalyzed by GSE119087

Data table header descriptions
ID_REF probeset IDs from the Affymetrix U-133 Plus 2.0 array
VALUE Quantile normalization of CEL file, PDNN probeset estimates, log2 transformation

Data table
ID_REF VALUE
210821_x_at 7.536
1569793_at 7.853
1561523_at 7.879
1570222_at 7.568
34764_at 8.139
217754_at 8.317
243388_at 7.894
221938_x_at 8.087
243829_at 7.764
235688_s_at 7.705
217536_x_at 8.844
1564315_at 7.872
226180_at 9.04
1556543_at 8.173
208429_x_at 7.984
40273_at 7.696
224510_s_at 7.372
1560548_at 7.707
214839_at 7.884
217203_at 8.221

Total number of rows: 54675

Table truncated, full table size 894 Kbytes.




Supplementary file Size Download File type/resource
GSM73663.CEL.gz 4.8 Mb (ftp)(http) CEL

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