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|
| Status |
Public on Nov 29, 2005 |
| Title |
UNC HNSCC03-0034 |
| Sample type |
RNA |
| |
|
| Source name |
HNSCC from FFPE block
|
| Organism |
Homo sapiens |
| Characteristics |
HNSCC from FFPE block
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Qiagen RNeasy Mini Kit (Qiagen, Valencia, CA)
|
| Label |
ENZO BioArray High Yield RNA Transcript Labeling Kit (Affymetrix, Santa Clara, CA)
|
| |
|
| Description |
HNSCC from FFPE block
|
| Data processing |
quantile normalization of CEL file, PDNN (PerfectMatch) estimation, log2 transformation
|
| |
|
| Submission date |
Sep 09, 2005 |
| Last update date |
Aug 28, 2018 |
| Contact name |
Christine H. Chung |
| E-mail(s) |
christine.chung@vanderbilt.edu
|
| Phone |
615-322-4967
|
| Fax |
615343-7602
|
| Organization name |
Vanderbilt University
|
| Department |
Internal Medicine
|
| Lab |
Chung
|
| Street address |
777 PRB
|
| City |
Nashville |
| State/province |
TN |
| ZIP/Postal code |
37232-6307 |
| Country |
USA |
| |
|
| Platform ID |
GPL570 |
| Series (1) |
| GSE3292 |
Gene expression signature of HPV in head and neck squamous cell carcinoma |
|
| Relations |
| Reanalyzed by |
GSE119087 |
| Data table header descriptions |
| ID_REF |
probeset IDs from the Affymetrix U-133 Plus 2.0 array |
| VALUE |
Quantile normalization of CEL file, PDNN probeset estimates, log2 transformation |
| Data table |
| ID_REF |
VALUE |
| 210821_x_at |
7.755 |
| 1569793_at |
7.881 |
| 1561523_at |
7.848 |
| 1570222_at |
7.702 |
| 34764_at |
8.195 |
| 217754_at |
8.247 |
| 243388_at |
7.909 |
| 221938_x_at |
8.131 |
| 243829_at |
7.685 |
| 235688_s_at |
7.965 |
| 217536_x_at |
9.182 |
| 1564315_at |
7.888 |
| 226180_at |
8.707 |
| 1556543_at |
8.336 |
| 208429_x_at |
7.976 |
| 40273_at |
7.493 |
| 224510_s_at |
7.497 |
| 1560548_at |
7.721 |
| 214839_at |
8.007 |
| 217203_at |
8.188 |
Total number of rows: 54675
Table truncated, full table size 893 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM73677.CEL.gz |
4.3 Mb |
(ftp)(http) |
CEL |
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