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Sample GSM738057 Query DataSets for GSM738057
Status Public on Jan 17, 2013
Title Df16(A)+/- E17 prefrontal cortex biological replicate 5
Sample type RNA
 
Source name MUT_E17_PFC_biological replicate_5
Organism Mus musculus
Characteristics genotype: Df16(A)+/-
age: E17
tissue: prefrontal cortex
genetic background: C57BL/6J
Growth protocol Embryoic day 17 and postnatal day 6 littermates were collected
Extracted molecule total RNA
Extraction protocol Total RNA were extracted and purified with the miRNeasy Mini-kit (Qiagen).
Label biotin
Label protocol According to Affymetrix Standard Protocols
 
Hybridization protocol According to Affymetrix Standard Protocols
Scan protocol According to Affymetrix Standard Protocols
Data processing The CEL files were normalized and analyzed using packages in Bioconductor project. The raw intensity data of all PFC samples or HPC samples were first RMA normalized and log2 transformed. differential expression analysis was conducted using limma package.
 
Submission date Jun 06, 2011
Last update date Jan 17, 2013
Contact name Bin XU
Organization name columbia university
Street address 1051 Riverside Drive
City New York
State/province NY
ZIP/Postal code 10032
Country USA
 
Platform ID GPL11180
Series (1)
GSE29767 Gene expression profiles in the hippocampi and prefrontal cortex of Df16(A)+/- mice at embryonic day 17, postnatal day 6, and adult stages

Data table header descriptions
ID_REF
VALUE RMA signal intensity (log2 transformed)

Data table
ID_REF VALUE
1415670_PM_at 8.695062746
1415671_PM_at 10.41187974
1415672_PM_at 10.90133754
1415673_PM_at 8.310927231
1415674_PM_a_at 10.01637298
1415675_PM_at 8.827858487
1415676_PM_a_at 10.2511435
1415677_PM_at 8.595420093
1415678_PM_at 9.616396618
1415679_PM_at 10.38084115
1415680_PM_at 8.555737245
1415681_PM_at 9.259413385
1415682_PM_at 8.035777632
1415683_PM_at 9.097103186
1415684_PM_at 6.920512637
1415685_PM_at 8.399047568
1415686_PM_at 9.297659657
1415687_PM_a_at 9.887178377
1415688_PM_at 10.48013315
1415689_PM_s_at 9.652978448

Total number of rows: 45141

Table truncated, full table size 1159 Kbytes.




Supplementary file Size Download File type/resource
GSM738057_5500214112726021212802_1479JAG100_F06_91010.CEL.gz 2.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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