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Sample GSM738079 Query DataSets for GSM738079
Status Public on Jan 17, 2013
Title Df16(A)+/- P6 hippocampus biological replicate 7
Sample type RNA
 
Source name MUT_P6_HPC_biological replicate_7
Organism Mus musculus
Characteristics genotype: Df16(A)+/-
age: P6
tissue: hippocampus
genetic background: C57BL/6J
Growth protocol Embryoic day 17 and postnatal day 6 littermates were collected
Extracted molecule total RNA
Extraction protocol Total RNA were extracted and purified with the miRNeasy Mini-kit (Qiagen).
Label biotin
Label protocol According to Affymetrix Standard Protocols
 
Hybridization protocol According to Affymetrix Standard Protocols
Scan protocol According to Affymetrix Standard Protocols
Data processing The CEL files were normalized and analyzed using packages in Bioconductor project. The raw intensity data of all PFC samples or HPC samples were first RMA normalized and log2 transformed. differential expression analysis was conducted using limma package.
 
Submission date Jun 06, 2011
Last update date Jan 17, 2013
Contact name Bin XU
Organization name columbia university
Street address 1051 Riverside Drive
City New York
State/province NY
ZIP/Postal code 10032
Country USA
 
Platform ID GPL11180
Series (1)
GSE29767 Gene expression profiles in the hippocampi and prefrontal cortex of Df16(A)+/- mice at embryonic day 17, postnatal day 6, and adult stages

Data table header descriptions
ID_REF
VALUE RMA signal intensity (log2 transformed)

Data table
ID_REF VALUE
1415670_PM_at 8.103389377
1415671_PM_at 10.74863743
1415672_PM_at 10.54851928
1415673_PM_at 8.573770472
1415674_PM_a_at 9.822760717
1415675_PM_at 8.77094477
1415676_PM_a_at 10.518467
1415677_PM_at 9.110343024
1415678_PM_at 9.904405679
1415679_PM_at 9.892145896
1415680_PM_at 7.945216044
1415681_PM_at 9.175417405
1415682_PM_at 7.377881202
1415683_PM_at 8.967625328
1415684_PM_at 6.701319938
1415685_PM_at 8.007887011
1415686_PM_at 9.118054327
1415687_PM_a_at 10.74398145
1415688_PM_at 9.794832918
1415689_PM_s_at 8.260975178

Total number of rows: 45141

Table truncated, full table size 1159 Kbytes.




Supplementary file Size Download File type/resource
GSM738079_5500214112726021212802_1479JAG76_E08_91010.CEL.gz 2.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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