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Sample GSM738162 Query DataSets for GSM738162
Status Public on Aug 01, 2011
Title muscle_control_rep4
Sample type RNA
 
Source name muscle
Organism Mus musculus
Characteristics age: 619d
Sex: M
strain: A/J
tumor: control
Extracted molecule total RNA
Extraction protocol Total RNA was extracted with Trizol Reagent, followed by Qiagen DNAse1 treatment according to manufacturer's protocol. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Illumina TotalPrep RNA Amplification Kit
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description GES07_0173
Data processing log2-transformed Illumina average intensity data followed by quantile normalization
 
Submission date Jun 07, 2011
Last update date Aug 01, 2011
Contact name Roger Sher
E-mail(s) roger.sher@jax.org
Phone 207-288-6503
Fax 207-288-6077
Organization name The Jackson Laboratory
Street address 600 Main Street
City Bar Harbor
ZIP/Postal code 04609
Country USA
 
Platform ID GPL6481
Series (1)
GSE29775 Rhabdomyosarcomas in aging A/J mice

Data table header descriptions
ID_REF
VALUE quantile normalized log2-transformed Illumina average intensity data
Detection Pval

Data table
ID_REF VALUE Detection Pval
10243 7.73643442 0.04865877
10280 7.19966186 0.2788522
10575 8.57654962 0.00561447
20048 7.61350831 0.07049283
20296 14.3102547 0
20343 7.40413394 0.139738
20373 7.0576689 0.4173425
20431 14.237528 0
50014 6.86823433 0.7467249
50017 7.53395985 0.0904554
50019 12.5406261 0
50020 8.18207111 0.01372427
50022 6.67017575 0.9588272
50025 6.93539646 0.625078
50026 6.93966843 0.6200873
50035 7.04428297 0.4398004
50037 8.32933522 0.00998129
50039 11.5537791 0
50040 8.4672177 0.00748596
50041 10.5156409 0

Total number of rows: 46643

Table truncated, full table size 1304 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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