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GEO accession:
Sample GSM74069
Query DataSets for GSM74069
Status
Public on Sep 19, 2005
Title
oocyte from primary follicle stage rep3 (430B)
Sample type
RNA
Source name
oocyte
Organism
Mus musculus
Characteristics
in vivo,primary follicle stage, oocyte
Extracted molecule
total RNA
Extraction protocol
90 oocytes were collected from ovary of 6 day old SJLB6 female mouse.Total RNA was extracted and purified using an Picopure kit (Arcturus).
Label
biotin
Label protocol
total RNA from 90 oocytes was processed to produce biotinylated cRNA targets using Affy Small Sample Target Labeling Assay Version II.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
none provided
Data processing
Affymetrix Microarray Suite version 5.0
Submission date
Sep 12, 2005
Last update date
Sep 20, 2005
Contact name
Hua Pan
E-mail(s)
huapan@sas.upenn.edu
Organization name
University of Pennsylvania
Department
Department of Biology
Street address
415 S University Avenue
City
Philadelphia
State/province
PA
ZIP/Postal code
19104
Country
USA
Platform ID
GPL340
Series (2)
GSE3291
Gene expression in the oocyte at primary follicle stage
GSE3351
Gene expression during oocyte development
Data table header descriptions
ID_REF
VALUE
MAS5-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
Data table
ID_REF
VALUE
ABS_CALL
AFFX-18SRNAMur/X00686_3_at
881.25
P
AFFX-18SRNAMur/X00686_5_at
1760.45
P
AFFX-18SRNAMur/X00686_M_at
446.25
P
AFFX-b-ActinMur/M12481_3_at
6702.4004
P
AFFX-b-ActinMur/M12481_5_at
1597.25
P
AFFX-b-ActinMur/M12481_M_at
2776.6
P
AFFX-BioB-3_at
77.55
P
AFFX-BioB-5_at
146.25
P
AFFX-BioB-M_at
172.05
P
AFFX-BioC-3_at
225.45
P
AFFX-BioC-5_at
374
P
AFFX-BioDn-3_at
1374.3999
P
AFFX-BioDn-5_at
222.09999
P
AFFX-CreX-3_at
5985.05
P
AFFX-CreX-5_at
3847
P
AFFX-DapX-3_at
8.7
A
AFFX-DapX-5_at
19.750002
A
AFFX-DapX-M_at
26.25
A
AFFX-GapdhMur/M32599_3_at
2376.35
P
AFFX-GapdhMur/M32599_5_at
319.09998
P
Total number of rows:
22475
Table truncated, full table size
401 Kbytes
.
Supplementary data files not provided
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