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Sample GSM7498 Query DataSets for GSM7498
Status Public on Jun 24, 2003
Title Type 2 Gaucher brain
Sample type SAGE
Anchor NlaIII
Tag Count 31538
Tag Length 10
 
Source name Type 2 Gaucher patient cerebral cortex gray matter, aged 8 months
Organism Homo sapiens
Extracted molecule total RNA
 
Description This library was constructed from mRNA derived from an eight month old female with type 2 Gaucher disease according to the SAGE protocol of V. E. Velculescu et al. (1995), in the laboratory of R. L. Proia (NIDDK, NIH).
Sex: female
Organ: brain
Lab host DH10B
Vector: pZero
Vector type: plasmid
R. Site 1: Sph1
R. Site 2: Sph1
Library treatment: none
Tissue description: type 2 Gaucher patient
Tissue supplier: Cynthia Tifft
Sample type: cerebral cortex
Producer: R.L.Proia laboratory, NIDDK, NIH
Clones generated: 500
Sequences generated: 500
Keywords = Gaucher disease, sphingolipidoses, lysosomal storage disease, neurodegeneration
 
Submission date Jun 23, 2003
Last update date May 28, 2005
Contact name Richard Leonard Proia
E-mail(s) proia@nih.gov
Phone 301-496-4391
Organization name NIDDK
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL4
Series (1)
GSE25756 SAGE analysis of Type 2 Gaucher brain

Data table header descriptions
TAG Ten base SAGE tag,
COUNT Absolute tag count
TPM Tags per million, or (1000000*COUNT)/(Total tags)

Data table
TAG COUNT TPM
AAAAAAAAAA 178 5643.985034
AAAAAAAAAG 1 31.70778109
AAAAAAAAAT 1 31.70778109
AAAAAAAAGA 1 31.70778109
AAAAAAAAGG 1 31.70778109
AAAAAAAATG 1 31.70778109
AAAAAAACAG 1 31.70778109
AAAAAAACTA 1 31.70778109
AAAAAAAGCA 1 31.70778109
AAAAAAATAA 1 31.70778109
AAAAAAATAG 1 31.70778109
AAAAAACAGC 6 190.2466865
AAAAAACATC 2 63.41556218
AAAAAACCCA 10 317.0778109
AAAAAACTCC 2 63.41556218
AAAAAACTGG 1 31.70778109
AAAAAACTGT 1 31.70778109
AAAAAAGGTA 1 31.70778109
AAAAAAGTCT 1 31.70778109
AAAAAATACA 1 31.70778109

Total number of rows: 14102

Table truncated, full table size 344 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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