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Sample GSM754507 Query DataSets for GSM754507
Status Public on Jul 07, 2011
Title blood 0.5g T0 ppB
Sample type RNA
 
Source name blood 0.5g T0 ppB
Organism Homo sapiens
Characteristics donor: B
Sex: M
tissue: blood
treatment: control (unexposed)
time: 0h
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using the PAXgene Blood RNA kit (PreAnalytiX/Qiagen) according to the manufacturers protocol (including Dnase) and was globin reduced using the GLOBINclear kit (Ambion) according to the manufacturers protocol
Label biotin
Label protocol We used standard Affymetrix labeling protocols
 
Hybridization protocol We used standard Affymetrix hybridisation rotocols
Scan protocol We used standard Affymetrix scanning parameters
Description globin reduced total RNA
control sample (unexposed)
Data processing All samples were normalized by RMA algorithm and analyzed by SAM (FC>1.5 and FDR<10%).
 
Submission date Jul 05, 2011
Last update date Jul 07, 2011
Contact name marlon jetten
E-mail(s) marlon.jetten@maastrichtuniversity.nl
Organization name maastricht university
Street address universiteitssingel 50
City Maastricht
ZIP/Postal code 6200MD
Country Netherlands
 
Platform ID GPL10526
Series (1)
GSE30418 Low dose human APAP exposure

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
1_at 99.97809332
10_at 15.64866958
100_at 538.4096276
1000_at 37.28034134
10000_at 19.9387429
10001_at 264.2509837
10002_at 18.56567509
10003_at 7.553707433
10004_at 125.7990152
100048912_at 11.72000672
100049716_at 92.03734168
10005_at 271.8908319
10006_at 650.5247348
10007_at 308.0405203
10008_at 314.3225181
10009_at 186.4669022
100093630_at 209.5797258
1001_at 20.69620047
10010_at 306.1897808
100101467_at 68.85832072

Total number of rows: 17788

Table truncated, full table size 361 Kbytes.




Supplementary file Size Download File type/resource
GSM754507_ppB_0.5g_t0_HG-U133_Plus_2_.CEL.gz 4.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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