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Sample GSM754533 Query DataSets for GSM754533
Status Public on Jul 07, 2011
Title blood 2g T0 ppD
Sample type RNA
 
Source name blood 2g T0 ppD
Organism Homo sapiens
Characteristics donor: D
Sex: M
tissue: blood
treatment: control (unexposed)
time: 0h
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using the PAXgene Blood RNA kit (PreAnalytiX/Qiagen) according to the manufacturers protocol (including Dnase) and was globin reduced using the GLOBINclear kit (Ambion) according to the manufacturers protocol
Label biotin
Label protocol We used standard Affymetrix labeling protocols
 
Hybridization protocol We used standard Affymetrix hybridisation rotocols
Scan protocol We used standard Affymetrix scanning parameters
Description globin reduced total RNA
control sample (unexposed)
Data processing All samples were normalized by RMA algorithm and analyzed by SAM (FC>1.5 and FDR<10%).
 
Submission date Jul 05, 2011
Last update date Jul 07, 2011
Contact name marlon jetten
E-mail(s) marlon.jetten@maastrichtuniversity.nl
Organization name maastricht university
Street address universiteitssingel 50
City Maastricht
ZIP/Postal code 6200MD
Country Netherlands
 
Platform ID GPL10526
Series (1)
GSE30418 Low dose human APAP exposure

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
1_at 45.33953191
10_at 12.82055341
100_at 355.0982324
1000_at 25.36728879
10000_at 11.40319123
10001_at 147.9870826
10002_at 12.41517027
10003_at 5.53421251
10004_at 81.98158255
100048912_at 11.89155431
100049716_at 85.17178972
10005_at 228.5623709
10006_at 306.5739132
10007_at 250.4435832
10008_at 297.7235638
10009_at 73.72293448
100093630_at 95.50743571
1001_at 9.972253146
10010_at 147.8999748
100101467_at 44.79281082

Total number of rows: 17788

Table truncated, full table size 361 Kbytes.




Supplementary file Size Download File type/resource
GSM754533_ppD_t0_HG-U133_Plus_2_.CEL.gz 4.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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