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Sample GSM754540 Query DataSets for GSM754540
Status Public on Jul 07, 2011
Title blood 2g T1 ppE
Sample type RNA
 
Source name blood 2g T1 ppE
Organism Homo sapiens
Characteristics donor: E
Sex: F
tissue: blood
treatment: 2g APAP exposure
time: 1h
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using the PAXgene Blood RNA kit (PreAnalytiX/Qiagen) according to the manufacturers protocol (including Dnase) and was globin reduced using the GLOBINclear kit (Ambion) according to the manufacturers protocol
Label biotin
Label protocol We used standard Affymetrix labeling protocols
 
Hybridization protocol We used standard Affymetrix hybridisation rotocols
Scan protocol We used standard Affymetrix scanning parameters
Description globin reduced total RNA
sample 2g APAP exposure
Data processing All samples were normalized by RMA algorithm and analyzed by SAM (FC>1.5 and FDR<10%).
 
Submission date Jul 05, 2011
Last update date Jul 07, 2011
Contact name marlon jetten
E-mail(s) marlon.jetten@maastrichtuniversity.nl
Organization name maastricht university
Street address universiteitssingel 50
City Maastricht
ZIP/Postal code 6200MD
Country Netherlands
 
Platform ID GPL10526
Series (1)
GSE30418 Low dose human APAP exposure

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
1_at 49.48750111
10_at 12.20513211
100_at 275.9859121
1000_at 22.26053785
10000_at 11.49528557
10001_at 159.2917361
10002_at 11.78874055
10003_at 4.895028331
10004_at 60.95209143
100048912_at 11.89016166
100049716_at 70.9047265
10005_at 194.4085057
10006_at 555.6477826
10007_at 269.6590643
10008_at 521.5687151
10009_at 141.1162207
100093630_at 76.68151016
1001_at 12.48178824
10010_at 310.3368626
100101467_at 49.008452

Total number of rows: 17788

Table truncated, full table size 361 Kbytes.




Supplementary file Size Download File type/resource
GSM754540_ppE_t1_HG-U133_Plus_2_.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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