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Sample GSM754546 Query DataSets for GSM754546
Status Public on Jul 07, 2011
Title blood 2g T7 ppE
Sample type RNA
 
Source name blood 2g T7 ppE
Organism Homo sapiens
Characteristics donor: E
Sex: F
tissue: blood
treatment: 2g APAP exposure
time: 7h
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using the PAXgene Blood RNA kit (PreAnalytiX/Qiagen) according to the manufacturers protocol (including Dnase) and was globin reduced using the GLOBINclear kit (Ambion) according to the manufacturers protocol
Label biotin
Label protocol We used standard Affymetrix labeling protocols
 
Hybridization protocol We used standard Affymetrix hybridisation rotocols
Scan protocol We used standard Affymetrix scanning parameters
Description globin reduced total RNA
sample 2g APAP exposure
Data processing All samples were normalized by RMA algorithm and analyzed by SAM (FC>1.5 and FDR<10%).
 
Submission date Jul 05, 2011
Last update date Jul 07, 2011
Contact name marlon jetten
E-mail(s) marlon.jetten@maastrichtuniversity.nl
Organization name maastricht university
Street address universiteitssingel 50
City Maastricht
ZIP/Postal code 6200MD
Country Netherlands
 
Platform ID GPL10526
Series (1)
GSE30418 Low dose human APAP exposure

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
1_at 43.35544753
10_at 12.36533334
100_at 273.2964538
1000_at 24.95200534
10000_at 12.06981991
10001_at 190.7823822
10002_at 11.83505336
10003_at 5.720563707
10004_at 65.0615713
100048912_at 11.0141814
100049716_at 69.84430292
10005_at 216.1684083
10006_at 476.9960091
10007_at 228.1150116
10008_at 406.9824449
10009_at 126.2801167
100093630_at 104.301655
1001_at 13.0236695
10010_at 275.56059
100101467_at 56.1294084

Total number of rows: 17788

Table truncated, full table size 361 Kbytes.




Supplementary file Size Download File type/resource
GSM754546_ppE_t7_HG-U133_Plus_2_.CEL.gz 4.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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