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Sample GSM754550 Query DataSets for GSM754550
Status Public on Jul 07, 2011
Title blood 2g T25 ppC
Sample type RNA
 
Source name blood 2g T25 ppC
Organism Homo sapiens
Characteristics donor: C
Sex: M
tissue: blood
treatment: 2g APAP exposure
time: 25h
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using the PAXgene Blood RNA kit (PreAnalytiX/Qiagen) according to the manufacturers protocol (including Dnase) and was globin reduced using the GLOBINclear kit (Ambion) according to the manufacturers protocol
Label biotin
Label protocol We used standard Affymetrix labeling protocols
 
Hybridization protocol We used standard Affymetrix hybridisation rotocols
Scan protocol We used standard Affymetrix scanning parameters
Description globin reduced total RNA
sample 2g APAP exposure
Data processing All samples were normalized by RMA algorithm and analyzed by SAM (FC>1.5 and FDR<10%).
 
Submission date Jul 05, 2011
Last update date Jul 07, 2011
Contact name marlon jetten
E-mail(s) marlon.jetten@maastrichtuniversity.nl
Organization name maastricht university
Street address universiteitssingel 50
City Maastricht
ZIP/Postal code 6200MD
Country Netherlands
 
Platform ID GPL10526
Series (1)
GSE30418 Low dose human APAP exposure

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
1_at 37.74073104
10_at 10.18359743
100_at 311.7990634
1000_at 22.21659674
10000_at 12.89635407
10001_at 191.6684745
10002_at 9.915018897
10003_at 6.091218073
10004_at 81.81606695
100048912_at 11.61202178
100049716_at 99.15454451
10005_at 161.9783901
10006_at 580.212386
10007_at 245.4942094
10008_at 474.7491893
10009_at 124.9761372
100093630_at 79.73021298
1001_at 12.37443579
10010_at 252.7382118
100101467_at 46.32805916

Total number of rows: 17788

Table truncated, full table size 361 Kbytes.




Supplementary file Size Download File type/resource
GSM754550_ppC_t25_HG-U133_Plus_2_.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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