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Sample GSM754552 Query DataSets for GSM754552
Status Public on Jul 07, 2011
Title blood 2g T25 ppE
Sample type RNA
 
Source name blood 2g T25 ppE
Organism Homo sapiens
Characteristics donor: E
Sex: F
tissue: blood
treatment: 2g APAP exposure
time: 25h
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using the PAXgene Blood RNA kit (PreAnalytiX/Qiagen) according to the manufacturers protocol (including Dnase) and was globin reduced using the GLOBINclear kit (Ambion) according to the manufacturers protocol
Label biotin
Label protocol We used standard Affymetrix labeling protocols
 
Hybridization protocol We used standard Affymetrix hybridisation rotocols
Scan protocol We used standard Affymetrix scanning parameters
Description globin reduced total RNA
sample 2g APAP exposure
Data processing All samples were normalized by RMA algorithm and analyzed by SAM (FC>1.5 and FDR<10%).
 
Submission date Jul 05, 2011
Last update date Jul 07, 2011
Contact name marlon jetten
E-mail(s) marlon.jetten@maastrichtuniversity.nl
Organization name maastricht university
Street address universiteitssingel 50
City Maastricht
ZIP/Postal code 6200MD
Country Netherlands
 
Platform ID GPL10526
Series (1)
GSE30418 Low dose human APAP exposure

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
1_at 41.80121374
10_at 11.09640388
100_at 291.2244067
1000_at 18.82796751
10000_at 10.92327316
10001_at 181.7128991
10002_at 10.99789676
10003_at 4.881182253
10004_at 60.28001743
100048912_at 13.07148417
100049716_at 71.12076922
10005_at 190.3701877
10006_at 513.0652353
10007_at 296.8339405
10008_at 410.4170274
10009_at 121.0395247
100093630_at 87.74994562
1001_at 13.78989276
10010_at 284.0893282
100101467_at 51.32622442

Total number of rows: 17788

Table truncated, full table size 361 Kbytes.




Supplementary file Size Download File type/resource
GSM754552_ppE_t25_HG-U133_Plus_2_.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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