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Sample GSM754560 Query DataSets for GSM754560
Status Public on Jul 07, 2011
Title blood 4g T25 ppA
Sample type RNA
 
Source name blood 4g T25 ppA
Organism Homo sapiens
Characteristics donor: A
Sex: M
tissue: blood
treatment: 4g APAP exposure
time: 25h
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using the PAXgene Blood RNA kit (PreAnalytiX/Qiagen) according to the manufacturers protocol (including Dnase) and was globin reduced using the GLOBINclear kit (Ambion) according to the manufacturers protocol
Label biotin
Label protocol We used standard Affymetrix labeling protocols
 
Hybridization protocol We used standard Affymetrix hybridisation rotocols
Scan protocol We used standard Affymetrix scanning parameters
Description globin reduced total RNA
sample 4g APAP exposure
Data processing All samples were normalized by RMA algorithm and analyzed by SAM (FC>1.5 and FDR<10%).
 
Submission date Jul 05, 2011
Last update date Jul 07, 2011
Contact name marlon jetten
E-mail(s) marlon.jetten@maastrichtuniversity.nl
Organization name maastricht university
Street address universiteitssingel 50
City Maastricht
ZIP/Postal code 6200MD
Country Netherlands
 
Platform ID GPL10526
Series (1)
GSE30418 Low dose human APAP exposure

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
1_at 120.6329548
10_at 22.58666869
100_at 295.373248
1000_at 28.7367258
10000_at 13.83590646
10001_at 230.3732054
10002_at 20.66682283
10003_at 7.139362174
10004_at 92.15924077
100048912_at 9.989022291
100049716_at 79.87045545
10005_at 220.1038419
10006_at 653.0222172
10007_at 260.5676088
10008_at 310.1577039
10009_at 240.8701974
100093630_at 280.45245
1001_at 21.97765388
10010_at 280.5772087
100101467_at 68.88213269

Total number of rows: 17788

Table truncated, full table size 361 Kbytes.




Supplementary file Size Download File type/resource
GSM754560_ppAt_25_HG-U133_Plus_2_.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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