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Sample GSM754563 Query DataSets for GSM754563
Status Public on Jul 07, 2011
Title blood 4g T25 ppD
Sample type RNA
 
Source name blood 4g T25 ppD
Organism Homo sapiens
Characteristics donor: D
Sex: M
tissue: blood
treatment: 4g APAP exposure
time: 25h
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using the PAXgene Blood RNA kit (PreAnalytiX/Qiagen) according to the manufacturers protocol (including Dnase) and was globin reduced using the GLOBINclear kit (Ambion) according to the manufacturers protocol
Label biotin
Label protocol We used standard Affymetrix labeling protocols
 
Hybridization protocol We used standard Affymetrix hybridisation rotocols
Scan protocol We used standard Affymetrix scanning parameters
Description globin reduced total RNA
sample 4g APAP exposure
Data processing All samples were normalized by RMA algorithm and analyzed by SAM (FC>1.5 and FDR<10%).
 
Submission date Jul 05, 2011
Last update date Jul 07, 2011
Contact name marlon jetten
E-mail(s) marlon.jetten@maastrichtuniversity.nl
Organization name maastricht university
Street address universiteitssingel 50
City Maastricht
ZIP/Postal code 6200MD
Country Netherlands
 
Platform ID GPL10526
Series (1)
GSE30418 Low dose human APAP exposure

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
1_at 78.36700521
10_at 22.13410312
100_at 378.7408055
1000_at 29.37269955
10000_at 14.01464582
10001_at 216.8016191
10002_at 17.7356068
10003_at 7.316680227
10004_at 94.73039526
100048912_at 10.65436838
100049716_at 83.82476306
10005_at 220.2271711
10006_at 658.7046762
10007_at 298.1830633
10008_at 262.9650684
10009_at 180.3366404
100093630_at 175.4713815
1001_at 27.79492096
10010_at 269.3485937
100101467_at 68.61989937

Total number of rows: 17788

Table truncated, full table size 361 Kbytes.




Supplementary file Size Download File type/resource
GSM754563_ppDt_25_HG-U133_Plus_2_.CEL.gz 4.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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