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Sample GSM757713 Query DataSets for GSM757713
Status Public on Jul 04, 2012
Title Expression data of 358_SCa
Sample type RNA
 
Source name Patient 358
Organism Homo sapiens
Characteristics tissue: Colorecal Cancer
Extracted molecule total RNA
Extraction protocol Surgically isolated colorectal cancers were immediately frozen in liquid nitrogen. Tissues were lysed and total RNA was isolated using RNeasy Mini Kit (QIAGEN, Chatswort,CA) according to the manufacturer’s instructions.
Label biotin
Label protocol Approximately 8 ug of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description CIN-high
Data processing Rubust Multichip Analysis (RMA)
 
Submission date Jul 10, 2011
Last update date Jul 04, 2012
Contact name Toshiaki Watanabe
Phone 81-3-5800-8653
Organization name University of Tokyo
Department Department of Surgical Oncology
Street address 7-3-1, Hongo
City Bunkyo-ku
State/province Tokyo
ZIP/Postal code 113-8655
Country Japan
 
Platform ID GPL570
Series (1)
GSE30540 A new classification of chromosome instability (CIN) phenotype, CIN-high and CIN-low

Data table header descriptions
ID_REF
VALUE log2 RMA signal

Data table
ID_REF VALUE
AFFX-BioB-5_at 0.007454872
AFFX-BioB-M_at 0.10785675
AFFX-BioB-3_at -0.04451275
AFFX-BioC-5_at -0.06536484
AFFX-BioC-3_at 0.032172203
AFFX-BioDn-5_at 0
AFFX-BioDn-3_at 0.018501282
AFFX-CreX-5_at 0.1430111
AFFX-CreX-3_at 0.13797474
AFFX-DapX-5_at -0.01842308
AFFX-DapX-M_at -0.11687946
AFFX-DapX-3_at 0
AFFX-LysX-5_at 0.12855244
AFFX-LysX-M_at 0.14534187
AFFX-LysX-3_at 0.09685421
AFFX-PheX-5_at 0.3660617
AFFX-PheX-M_at 0.007330895
AFFX-PheX-3_at 0.20991516
AFFX-ThrX-5_at -0.37295246
AFFX-ThrX-M_at -0.09788704

Total number of rows: 54675

Table truncated, full table size 1166 Kbytes.




Supplementary file Size Download File type/resource
GSM757713.CEL.gz 5.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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