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Sample GSM757719 Query DataSets for GSM757719
Status Public on Jul 04, 2012
Title Expression data of 2_Ca
Sample type RNA
 
Source name Patient 2
Organism Homo sapiens
Characteristics tissue: Colorecal Cancer
Extracted molecule total RNA
Extraction protocol Surgically isolated colorectal cancers were immediately frozen in liquid nitrogen. Tissues were lysed and total RNA was isolated using RNeasy Mini Kit (QIAGEN, Chatswort,CA) according to the manufacturer’s instructions.
Label biotin
Label protocol Approximately 8 ug of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description CIN-high
Data processing Rubust Multichip Analysis (RMA)
 
Submission date Jul 10, 2011
Last update date Jul 04, 2012
Contact name Toshiaki Watanabe
Phone 81-3-5800-8653
Organization name University of Tokyo
Department Department of Surgical Oncology
Street address 7-3-1, Hongo
City Bunkyo-ku
State/province Tokyo
ZIP/Postal code 113-8655
Country Japan
 
Platform ID GPL570
Series (1)
GSE30540 A new classification of chromosome instability (CIN) phenotype, CIN-high and CIN-low

Data table header descriptions
ID_REF
VALUE log2 RMA signal

Data table
ID_REF VALUE
AFFX-BioB-5_at 0.41435242
AFFX-BioB-M_at 0.47239494
AFFX-BioB-3_at 0.31803703
AFFX-BioC-5_at 0.37786865
AFFX-BioC-3_at 0.29902458
AFFX-BioDn-5_at 0.16450596
AFFX-BioDn-3_at 0.30507183
AFFX-CreX-5_at 0.22729206
AFFX-CreX-3_at 0.25215912
AFFX-DapX-5_at 0.13546944
AFFX-DapX-M_at 0.061448097
AFFX-DapX-3_at 0.124479294
AFFX-LysX-5_at 0.1538639
AFFX-LysX-M_at 0.042978764
AFFX-LysX-3_at 0.1454134
AFFX-PheX-5_at 1.0069356
AFFX-PheX-M_at 0.38844967
AFFX-PheX-3_at 0.08959198
AFFX-ThrX-5_at 0.075250626
AFFX-ThrX-M_at 0.13833427

Total number of rows: 54675

Table truncated, full table size 1167 Kbytes.




Supplementary file Size Download File type/resource
GSM757719.CEL.gz 4.7 Mb (ftp)(http) CEL
Processed data included within Sample table
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