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Sample GSM757742 Query DataSets for GSM757742
Status Public on Jul 04, 2012
Title Expression data of 1_Ca
Sample type RNA
 
Source name Patient 1
Organism Homo sapiens
Characteristics tissue: Colorecal Cancer
Extracted molecule total RNA
Extraction protocol Surgically isolated colorectal cancers were immediately frozen in liquid nitrogen. Tissues were lysed and total RNA was isolated using RNeasy Mini Kit (QIAGEN, Chatswort,CA) according to the manufacturer’s instructions.
Label biotin
Label protocol Approximately 8 ug of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description CIN-high
Data processing Rubust Multichip Analysis (RMA)
 
Submission date Jul 10, 2011
Last update date Jul 04, 2012
Contact name Toshiaki Watanabe
Phone 81-3-5800-8653
Organization name University of Tokyo
Department Department of Surgical Oncology
Street address 7-3-1, Hongo
City Bunkyo-ku
State/province Tokyo
ZIP/Postal code 113-8655
Country Japan
 
Platform ID GPL570
Series (1)
GSE30540 A new classification of chromosome instability (CIN) phenotype, CIN-high and CIN-low

Data table header descriptions
ID_REF
VALUE log2 RMA signal

Data table
ID_REF VALUE
AFFX-BioB-5_at 0.11155033
AFFX-BioB-M_at 0
AFFX-BioB-3_at 0.1392088
AFFX-BioC-5_at 0.12048912
AFFX-BioC-3_at 0.06564331
AFFX-BioDn-5_at -0.18252468
AFFX-BioDn-3_at -0.1551094
AFFX-CreX-5_at -0.3200369
AFFX-CreX-3_at -0.23716545
AFFX-DapX-5_at 0.15326977
AFFX-DapX-M_at 0.038064003
AFFX-DapX-3_at -0.002567291
AFFX-LysX-5_at 0.11903715
AFFX-LysX-M_at 0.15845108
AFFX-LysX-3_at 0.010871887
AFFX-PheX-5_at 0.23902655
AFFX-PheX-M_at 0.11449051
AFFX-PheX-3_at 0.02597332
AFFX-ThrX-5_at 0.14187813
AFFX-ThrX-M_at 0.22364235

Total number of rows: 54675

Table truncated, full table size 1165 Kbytes.




Supplementary file Size Download File type/resource
GSM757742.CEL.gz 5.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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