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Sample GSM758308 Query DataSets for GSM758308
Status Public on Jul 18, 2011
Title intestine, BlimpWT, rep2
Sample type RNA
Source name Mid-intestine, WT
Organism Mus musculus
Characteristics strain: C57BL/6
genotype: Blimp wild type
tissue: mid-intestine
age: postnatal day 7
Treatment protocol Conditional knockout of Prdm1 (Blimp1) crossed into the VillinCre allele.
Growth protocol Specific pathogen-free (SPF) caging.
Extracted molecule total RNA
Extraction protocol Trizol, followed by Qiagen RNeasy cleanup.
Label Biotin
Label protocol Ambion cRNA synthesis for illumina.
Hybridization protocol According to illumina instructions.
Scan protocol According to illumina instructions on a BeadArray 500GX scanner.
Description 5388876105_D.AVG_Signal
Data processing All transcripts were taken from data with standard background subtraction in illumina Beadstudio, and all genes that had low intensity values (<5) were omitted. Subsequently, quantile normalization was performed.
Submission date Jul 11, 2011
Last update date Jul 18, 2011
Contact name Jarom Heijmans
Organization name Academic Medical Center
Department Tytgat Institute for liver and intestinal research
Lab van den Brink Group
Street address Meibergdreef 69-71
City Amsterdam
ZIP/Postal code 1105 BK
Country Netherlands
Platform ID GPL6885
Series (1)
GSE30556 VillinCre-Blimpflox mice postpartum day 7

Data table header descriptions
VALUE Normalized signal intensity
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212607 29.6 0.03258
ILMN_1212612 15.9 0.10902
ILMN_1212619 15.4 0.11278
ILMN_1212628 6.2 0.25689
ILMN_1212632 38 0.01504
ILMN_1212636 1065.2 0
ILMN_1212637 1473.8 0
ILMN_1212645 -6.6 0.65163
ILMN_1212648 200.2 0
ILMN_1212653 51.6 0.00501
ILMN_1212672 92.1 0
ILMN_1212682 1.1 0.37594
ILMN_1212683 -22.6 0.99373
ILMN_1212685 -9.7 0.74687
ILMN_1212692 2078.4 0
ILMN_1212693 38 0.01378
ILMN_1212695 13.1 0.1391
ILMN_1212698 -19.9 0.9812
ILMN_1212702 18433.4 0
ILMN_1212703 112.2 0

Total number of rows: 25697

Table truncated, full table size 598 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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