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Sample GSM758312 Query DataSets for GSM758312
Status Public on Jul 18, 2011
Title intestine, BlimpWT, rep6
Sample type RNA
 
Source name Mid-intestine, WT
Organism Mus musculus
Characteristics strain: C57BL/6
genotype: Blimp wild type
tissue: mid-intestine
age: postnatal day 7
Treatment protocol Conditional knockout of Prdm1 (Blimp1) crossed into the VillinCre allele.
Growth protocol Specific pathogen-free (SPF) caging.
Extracted molecule total RNA
Extraction protocol Trizol, followed by Qiagen RNeasy cleanup.
Label Biotin
Label protocol Ambion cRNA synthesis for illumina.
 
Hybridization protocol According to illumina instructions.
Scan protocol According to illumina instructions on a BeadArray 500GX scanner.
Description 5388876090_D.AVG_Signal
VillinCre-Blimpwt
Data processing All transcripts were taken from data with standard background subtraction in illumina Beadstudio, and all genes that had low intensity values (<5) were omitted. Subsequently, quantile normalization was performed.
 
Submission date Jul 11, 2011
Last update date Jul 18, 2011
Contact name Jarom Heijmans
E-mail(s) j.heijmans@amc.nl
Organization name Academic Medical Center
Department Tytgat Institute for liver and intestinal research
Lab van den Brink Group
Street address Meibergdreef 69-71
City Amsterdam
ZIP/Postal code 1105 BK
Country Netherlands
 
Platform ID GPL6885
Series (1)
GSE30556 VillinCre-Blimpflox mice postpartum day 7

Data table header descriptions
ID_REF
VALUE Normalized signal intensity
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212607 39.5 0.01128
ILMN_1212612 34 0.01754
ILMN_1212619 -4.4 0.56266
ILMN_1212628 -9 0.73935
ILMN_1212632 43.9 0.00752
ILMN_1212636 1027 0
ILMN_1212637 783.2 0
ILMN_1212645 13.1 0.13409
ILMN_1212648 203.9 0
ILMN_1212653 88.7 0
ILMN_1212672 99.2 0
ILMN_1212682 4.1 0.2995
ILMN_1212683 -10.7 0.79449
ILMN_1212685 -6.8 0.66667
ILMN_1212692 1924.9 0
ILMN_1212693 51.7 0.00251
ILMN_1212695 4.6 0.28571
ILMN_1212698 -9.8 0.76316
ILMN_1212702 21275.2 0
ILMN_1212703 116.9 0

Total number of rows: 25697

Table truncated, full table size 598 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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