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Sample GSM759697 Query DataSets for GSM759697
Status Public on Oct 04, 2012
Title Olig2_IP3.Cel
Sample type RNA
 
Source name Cortical Oligodendroglia
Organism Mus musculus
Characteristics strain: mix of c57/bl6j, FVB, and Swiss-Webster
cell type: Cortical Oligodendroglia
rna subtype: Ribosome bound RNA
dataset: dataset 1
Treatment protocol Either wildtype or induction of tumor (for tumor samples).
Growth protocol For first dataset, dissected cortex from adult mice For second dataset, dissected tumors from mice.
Extracted molecule total RNA
Extraction protocol Trizol followed by Qiagen RNeasy Minelute. Translating Ribosome Affinity Purification protocol (see Pubmed: [19013281])
Label Biotin
Label protocol Affymetric 2 cycle amplification
 
Hybridization protocol Standard Affymetrix Protocols
Scan protocol Standard Affymetrix Protocols
Data processing Within replicates GCRMA normalization, using R and Bioconductor. Custom Cdfs: Mouse4302_Mm_ENTREZG, following recommendations as in Pubmed: 20308160
 
Submission date Jul 13, 2011
Last update date Oct 04, 2012
Contact name Joseph D Dougherty
Organization name Washington University
Department Genetics and Psychiatry
Street address 4566 Scott Ave, box 8232
City St Louis
State/province Missouri
ZIP/Postal code 63110
Country USA
 
Platform ID GPL9746
Series (1)
GSE30626 Candidate pathways for promoting differentiation and quiescence of oligodendrocyte progenitor-like cells in glioblastoma

Data table header descriptions
ID_REF
VALUE GCRMA Expression level

Data table
ID_REF VALUE
100009600_at 2.110780819
100012_at 2.110780819
100017_at 8.444988127
100019_at 2.16420197
100034251_at 2.110780819
100036521_at 11.48166447
100037258_at 7.013660865
100037278_at 2.110780819
100038570_at 3.150421781
100038635_at 2.110780819
100038887_at 14.32452348
100038959_at 4.484390798
100039027_at 2.129289436
100039094_at 2.110780819
100039235_at 2.110780819
100039282_at 2.575779582
100039284_at 10.77228858
100039307_at 4.130956742
100039332_at 2.256651025
100039359_at 2.129176897

Total number of rows: 16395

Table truncated, full table size 340 Kbytes.




Supplementary file Size Download File type/resource
GSM759697.Cel.gz 3.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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