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Sample GSM759706 Query DataSets for GSM759706
Status Public on Oct 04, 2012
Title P_IP3.Cel
Sample type RNA
 
Source name Olig2 cells from Pdgf Tumor
Organism Mus musculus
Characteristics strain: mix of c57/bl6j, FVB, and Swiss-Webster
cell type: Olig2 cells from Pdgf Tumor
rna subtype: Ribosome bound RNA
dataset: dataset 2
Treatment protocol Either wildtype or induction of tumor (for tumor samples).
Growth protocol For first dataset, dissected cortex from adult mice For second dataset, dissected tumors from mice.
Extracted molecule total RNA
Extraction protocol Trizol followed by Qiagen RNeasy Minelute. Translating Ribosome Affinity Purification protocol (see Pubmed: [19013281])
Label Biotin
Label protocol Affymetric 2 cycle amplification
 
Hybridization protocol Standard Affymetrix Protocols
Scan protocol Standard Affymetrix Protocols
Data processing Within replicates GCRMA normalization, using R and Bioconductor. Custom Cdfs: Mouse4302_Mm_ENTREZG, following recommendations as in Pubmed: 20308160
 
Submission date Jul 13, 2011
Last update date Oct 04, 2012
Contact name Joseph D Dougherty
Organization name Washington University
Department Genetics and Psychiatry
Street address 4566 Scott Ave, box 8232
City St Louis
State/province Missouri
ZIP/Postal code 63110
Country USA
 
Platform ID GPL9746
Series (1)
GSE30626 Candidate pathways for promoting differentiation and quiescence of oligodendrocyte progenitor-like cells in glioblastoma

Data table header descriptions
ID_REF
VALUE GCRMA Expression level

Data table
ID_REF VALUE
100009600_at 2.112280004
100012_at 2.112280004
100017_at 2.112280004
100019_at 2.112280004
100034251_at 2.112280004
100036521_at 11.47826593
100037258_at 6.619352548
100037278_at 2.112280004
100038570_at 2.121077358
100038635_at 2.112280004
100038887_at 14.28126613
100038959_at 2.341124562
100039027_at 2.112280004
100039094_at 2.112280004
100039235_at 2.112280004
100039282_at 2.958994031
100039284_at 10.4367123
100039307_at 6.238656647
100039332_at 2.112280004
100039359_at 2.115465853

Total number of rows: 16395

Table truncated, full table size 340 Kbytes.




Supplementary file Size Download File type/resource
GSM759706.Cel.gz 3.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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