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Sample GSM759715 Query DataSets for GSM759715
Status Public on Oct 04, 2012
Title R_UB3.Cel
Sample type RNA
 
Source name Total RNA from Recruited Tumor
Organism Mus musculus
Characteristics strain: mix of c57/bl6j, FVB, and Swiss-Webster
cell type: Total RNA from Recruited Tumor
rna subtype: Total RNA
dataset: dataset 2
Treatment protocol Either wildtype or induction of tumor (for tumor samples).
Growth protocol For first dataset, dissected cortex from adult mice For second dataset, dissected tumors from mice.
Extracted molecule total RNA
Extraction protocol Trizol followed by Qiagen RNeasy Minelute. Translating Ribosome Affinity Purification protocol (see Pubmed: [19013281])
Label Biotin
Label protocol Affymetric 2 cycle amplification
 
Hybridization protocol Standard Affymetrix Protocols
Scan protocol Standard Affymetrix Protocols
Data processing Within replicates GCRMA normalization, using R and Bioconductor. Custom Cdfs: Mouse4302_Mm_ENTREZG, following recommendations as in Pubmed: 20308160
 
Submission date Jul 13, 2011
Last update date Oct 04, 2012
Contact name Joseph D Dougherty
Organization name Washington University
Department Genetics and Psychiatry
Street address 4566 Scott Ave, box 8232
City St Louis
State/province Missouri
ZIP/Postal code 63110
Country USA
 
Platform ID GPL9746
Series (1)
GSE30626 Candidate pathways for promoting differentiation and quiescence of oligodendrocyte progenitor-like cells in glioblastoma

Data table header descriptions
ID_REF
VALUE GCRMA Expression level

Data table
ID_REF VALUE
100009600_at 2.023585161
100012_at 2.023585161
100017_at 7.037105355
100019_at 5.536961498
100034251_at 2.969705112
100036521_at 12.63430003
100037258_at 7.38445406
100037278_at 2.126714409
100038570_at 5.505178664
100038635_at 2.023585161
100038887_at 14.09418357
100038959_at 2.420977483
100039027_at 2.023585161
100039094_at 2.023585161
100039235_at 2.023585161
100039282_at 5.613826334
100039284_at 11.99386681
100039307_at 2.325008903
100039332_at 2.023585161
100039359_at 2.066495202

Total number of rows: 16395

Table truncated, full table size 340 Kbytes.




Supplementary file Size Download File type/resource
GSM759715.Cel.gz 3.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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