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Sample GSM763982 Query DataSets for GSM763982
Status Public on Dec 18, 2011
Title heart rep3
Sample type RNA
 
Source name mouse heart tissue
Organism Mus musculus
Characteristics strain: C57BL/6
Sex: male
age: 7 weeks
tissue: heart
Treatment protocol N/A
Growth protocol N/A
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using QIAGEN Rneasy mini kit
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description heart-3
replicate 3
Data processing The data were normalised using quantile normalisation with lumi in R
 
Submission date Jul 19, 2011
Last update date Dec 18, 2011
Contact name Alistair R Forrest
E-mail(s) forrest@gsc.riken.jp
Organization name RIKEN
Department RIKEN OMICS science centre
Street address 1-7-22 Suehiro-cho, Tsurumi-ku
City Yokohama
ZIP/Postal code 230-0045
Country Japan
 
Platform ID GPL6333
Series (1)
GSE30793 Identification of novel markers of the mesothelial lineage and mesothelioma

Data table header descriptions
ID_REF
VALUE quantile normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
10181072_239_rc-S 13.05728645 0.63675743
10181072_290-S 16.13642521 0.75990099
10181072_290_rc-S 10.48025976 0.41398515
10181072_311-S 10.33044257 0.39727723
10181072_311_rc-S 8.307799304 0.12685644
10181072_418-S 8.09171581 0.10705446
10181072_418_rc-S 12.38628022 0.59220297
10181072_486-S 7.623360855 0.07178218
10181072_486_rc-S 16.50529169 0.77227723
17974913_3385-S 13.13635162 0.64108911
17974913_3385_rc-S 10.36611632 0.39851485
17974913_3999_rc-S 7.648969337 0.0730198
17974913_4071-S 7.458580819 0.0575495
17974913_4071_rc-S 7.001680598 0.0259901
17974913_4426-S 10.69930445 0.44616337
17974913_4426_rc-S 16.27489435 0.76175743
17974913_4962-S 8.233657783 0.12066832
17974913_4962_rc-S 9.320909528 0.26732673
18S_rRNA_X00686_301-S 67357.6855 1
18S_rRNA_X00686_523-S 27138.8105 1

Total number of rows: 46120

Table truncated, full table size 1891 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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