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Sample GSM763984 Query DataSets for GSM763984
Status Public on Dec 18, 2011
Title lung rep2
Sample type RNA
 
Source name mouse lung tissue
Organism Mus musculus
Characteristics strain: C57BL/6
Sex: male
age: 7 weeks
tissue: lung
Treatment protocol N/A
Growth protocol N/A
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using QIAGEN Rneasy mini kit
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description lung-2
replicate 2
Data processing The data were normalised using quantile normalisation with lumi in R
 
Submission date Jul 19, 2011
Last update date Dec 18, 2011
Contact name Alistair R Forrest
E-mail(s) forrest@gsc.riken.jp
Organization name RIKEN
Department RIKEN OMICS science centre
Street address 1-7-22 Suehiro-cho, Tsurumi-ku
City Yokohama
ZIP/Postal code 230-0045
Country Japan
 
Platform ID GPL6333
Series (1)
GSE30793 Identification of novel markers of the mesothelial lineage and mesothelioma

Data table header descriptions
ID_REF
VALUE quantile normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
10181072_239_rc-S 10.47677659 0.47462871
10181072_290-S 17.36099341 0.87066832
10181072_290_rc-S 14.00617217 0.76856436
10181072_311-S 9.925109354 0.39170792
10181072_311_rc-S 10.62465559 0.4950495
10181072_418-S 6.790703299 0.02475248
10181072_418_rc-S 15.61765361 0.83415842
10181072_486-S 7.794760315 0.08663366
10181072_486_rc-S 11.53894184 0.59715347
17974913_3385-S 12.27591349 0.65717822
17974913_3385_rc-S 8.597530135 0.18935644
17974913_3999_rc-S 6.31589622 0.0105198
17974913_4071-S 8.419357453 0.16584158
17974913_4071_rc-S 7.89571844 0.09715347
17974913_4426-S 9.78414201 0.37871287
17974913_4426_rc-S 17.60036481 0.875
17974913_4962-S 7.911830107 0.10024752
17974913_4962_rc-S 8.615615178 0.19121287
18S_rRNA_X00686_301-S 59516.93967 1
18S_rRNA_X00686_523-S 16333.02717 1

Total number of rows: 46120

Table truncated, full table size 1880 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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