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Sample GSM763987 Query DataSets for GSM763987
Status Public on Dec 18, 2011
Title fat rep3
Sample type RNA
 
Source name mouse fat tissue
Organism Mus musculus
Characteristics strain: C57BL/6
Sex: male
age: 7 weeks
tissue: fat
Treatment protocol N/A
Growth protocol N/A
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using QIAGEN Rneasy mini kit
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description fat-3
replicate 3
Data processing The data were normalised using quantile normalisation with lumi in R
 
Submission date Jul 19, 2011
Last update date Dec 18, 2011
Contact name Alistair R Forrest
E-mail(s) forrest@gsc.riken.jp
Organization name RIKEN
Department RIKEN OMICS science centre
Street address 1-7-22 Suehiro-cho, Tsurumi-ku
City Yokohama
ZIP/Postal code 230-0045
Country Japan
 
Platform ID GPL6333
Series (1)
GSE30793 Identification of novel markers of the mesothelial lineage and mesothelioma

Data table header descriptions
ID_REF
VALUE quantile normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
10181072_239_rc-S 17.30762376 0.87561881
10181072_290-S 13.62158661 0.75
10181072_290_rc-S 16.6369222 0.86262376
10181072_311-S 11.25608388 0.54826733
10181072_311_rc-S 12.13497255 0.64170792
10181072_418-S 7.841349595 0.09962871
10181072_418_rc-S 12.16659469 0.64356436
10181072_486-S 8.564764957 0.1924505
10181072_486_rc-S 9.265509226 0.27970297
17974913_3385-S 12.4510228 0.67141089
17974913_3385_rc-S 11.82359436 0.60767327
17974913_3999_rc-S 7.751030099 0.08910891
17974913_4071-S 7.929524761 0.11262376
17974913_4071_rc-S 7.519927519 0.06621287
17974913_4426-S 9.381360105 0.29579208
17974913_4426_rc-S 12.3315265 0.66089109
17974913_4962-S 8.277551817 0.14727723
17974913_4962_rc-S 10.85132966 0.49381188
18S_rRNA_X00686_301-S 11361.2355 1
18S_rRNA_X00686_523-S 2739.327169 1

Total number of rows: 46120

Table truncated, full table size 1874 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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