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Sample GSM764003 Query DataSets for GSM764003
Status Public on Dec 18, 2011
Title heart rep2
Sample type RNA
 
Source name mouse heart tissue
Organism Mus musculus
Characteristics strain: C57BL/6
Sex: male
age: 7 weeks
tissue: heart
Treatment protocol N/A
Growth protocol N/A
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using QIAGEN Rneasy mini kit
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description heart-2
replicate 2
Data processing The data were normalised using quantile normalisation with lumi in R
 
Submission date Jul 19, 2011
Last update date Dec 18, 2011
Contact name Alistair R Forrest
E-mail(s) forrest@gsc.riken.jp
Organization name RIKEN
Department RIKEN OMICS science centre
Street address 1-7-22 Suehiro-cho, Tsurumi-ku
City Yokohama
ZIP/Postal code 230-0045
Country Japan
 
Platform ID GPL6333
Series (1)
GSE30793 Identification of novel markers of the mesothelial lineage and mesothelioma

Data table header descriptions
ID_REF
VALUE quantile normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
10181072_239_rc-S 10.18001722 0.3490099
10181072_290-S 18.09091597 0.83415842
10181072_290_rc-S 13.42526406 0.6615099
10181072_311-S 10.65777338 0.40903465
10181072_311_rc-S 9.498158927 0.26794554
10181072_418-S 7.68994972 0.0779703
10181072_418_rc-S 12.40726901 0.58601485
10181072_486-S 9.030022271 0.20730198
10181072_486_rc-S 12.59598195 0.60334158
17974913_3385-S 11.96313006 0.54950495
17974913_3385_rc-S 11.5063578 0.50309406
17974913_3999_rc-S 7.852247238 0.08972772
17974913_4071-S 9.165152789 0.22277228
17974913_4071_rc-S 7.207840921 0.04269802
17974913_4426-S 11.84654495 0.53898515
17974913_4426_rc-S 11.79677512 0.53403465
17974913_4962-S 7.528143385 0.06621287
17974913_4962_rc-S 11.84654495 0.53898515
18S_rRNA_X00686_301-S 60129.45217 1
18S_rRNA_X00686_523-S 20452.80634 1

Total number of rows: 46120

Table truncated, full table size 1887 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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